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OP172709.1__WAX09072.1__BT61P1_00048__00048

Bact-Vir

OP172709.1__WAX09072.1__BT61P1_00048__00048

Identity

Accession:
OP172709 ↗
Kingdom:
phage

Quality

69.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-66_158-180
PDB
D2 medium residues 68-100_181-236
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6f2mA01 3.30.200.190 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.74 56.0 5.50e-01 82.0% 100.0%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.72 57.0 4.58e-01 84.3% 48.2%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 47.0 4.55e-01 79.8% 60.4%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.69 56.0 5.07e-01 87.6% 65.8%
1i8dA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 48.0 4.81e-01 88.8% 71.9%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.68 54.0 4.62e-01 87.6% 81.6%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 55.0 4.57e-01 88.8% 72.4%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 54.0 4.41e-01 87.6% 69.3%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 53.0 4.62e-01 87.6% 86.9%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 53.0 4.42e-01 87.6% 73.1%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.66 57.0 4.58e-01 100.0% 48.6%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.65 59.0 4.68e-01 100.0% 52.3%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 53.0 4.26e-01 88.8% 70.9%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 50.0 4.81e-01 86.5% 83.3%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.62 34.0 4.06e-01 98.9% 83.6%
5hb5B00 3.30.1610.10 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Peptidase S59, nucleoporin 0.62 43.0 3.66e-01 71.9% 73.6%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.62 46.0 4.57e-01 86.5% 75.8%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 48.0 4.63e-01 86.5% 73.5%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 40.0 4.02e-01 74.2% 64.1%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.61 51.0 4.77e-01 89.9% 80.7%
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.61 51.0 4.79e-01 100.0% 74.1%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.60 44.0 3.79e-01 76.4% 52.5%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 44.0 3.53e-01 87.6% 38.2%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.60 47.0 4.99e-01 84.3% 98.7%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 4.12e-01 87.6% 78.9%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.58 43.0 3.83e-01 80.9% 86.0%
6gmhK00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.58 39.0 3.60e-01 74.2% 53.0%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 31.0 3.71e-01 98.9% 84.3%
2e1bA02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.58 43.0 3.88e-01 80.9% 85.3%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.57 40.0 3.19e-01 73.0% 42.7%
1sz7A00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.57 45.0 3.78e-01 86.5% 76.7%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.14e-01 76.4% 77.9%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 40.0 4.16e-01 85.4% 80.7%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.56 45.0 4.25e-01 89.9% 78.8%
4z2yA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 39.0 2.92e-01 71.9% 45.4%
8fd9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 39.0 4.12e-01 75.3% 84.4%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.76e-01 75.3% 73.4%
4b9dB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.76e-01 73.0% 72.0%
2weiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.87e-01 75.3% 76.7%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.53 39.0 3.62e-01 78.7% 88.0%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.51e-01 78.7% 65.1%
7zvsB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.65e-01 75.3% 100.0%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.80e-01 77.5% 77.3%
3mdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.62e-01 78.7% 64.5%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 38.0 3.78e-01 77.5% 75.5%
3fpfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 36.0 2.55e-01 71.9% 51.9%
1qz8A01 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.52 39.0 3.79e-01 84.3% 73.3%
3g2fA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.85e-01 78.7% 82.8%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 37.0 3.79e-01 78.7% 82.0%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 42.0 3.20e-01 91.0% 55.7%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 43.0 3.88e-01 96.6% 68.0%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.50 32.0 3.60e-01 92.1% 91.8%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 35.0 3.53e-01 74.2% 89.4%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 55.0 5.22e-01 79.8% 100.0%
4995816 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 57.0 5.59e-01 83.1% 95.8%
3936663 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 57.0 5.12e-01 85.4% 76.0%
4952364 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.70 47.0 4.88e-01 79.8% 72.9%
3974369 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 55.0 5.62e-01 84.3% 92.9%
3945543 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 57.0 5.89e-01 100.0% 95.3%
5063188 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 52.0 3.98e-01 98.9% 34.0%
4982501 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 47.0 4.64e-01 77.5% 67.4%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 51.0 4.48e-01 82.0% 86.8%
3972102 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 58.0 5.64e-01 98.9% 84.0%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 58.0 5.99e-01 100.0% 100.0%
3590201 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 59.0 5.52e-01 100.0% 88.0%
5041372 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 51.0 5.14e-01 85.4% 91.1%
4032900 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 59.0 5.58e-01 100.0% 92.4%
4656128 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.65 53.0 4.11e-01 87.6% 70.0%
3349972 1.1.7.55 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF6469 0.65 59.0 5.14e-01 98.9% 77.7%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.65 51.0 5.14e-01 87.6% 92.4%
3690148 1.1.9.4 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.65 56.0 4.46e-01 100.0% 73.3%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 51.0 4.89e-01 87.6% 92.4%
3741028 1.1.7.81 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.64 54.0 5.17e-01 98.9% 80.0%
2642578 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.63 53.0 4.98e-01 100.0% 75.5%
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.63 56.0 5.35e-01 100.0% 89.5%
4117350 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.63 52.0 3.72e-01 89.9% 36.2%
119252 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.61 51.0 4.79e-01 100.0% 74.1%
3267253 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 4.03e-01 76.4% 65.3%
4944696 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.60 45.0 4.40e-01 85.4% 72.0%
3402635 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 50.0 4.43e-01 93.3% 77.8%
4172288 1.1.7.8 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.59 45.0 4.56e-01 85.4% 82.2%
3715054 206.1.1.78 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kinase-like 0.57 42.0 2.82e-01 77.5% 35.8%
5023383 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.57 45.0 4.07e-01 86.5% 96.8%
5081161 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 44.0 3.75e-01 86.5% 80.0%
None 0.56 46.0 3.02e-01 89.9% 52.8%
5058386 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.56 38.0 3.12e-01 71.9% 49.5%
4557453 304.102.1.9 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C 0.56 38.0 2.90e-01 71.9% 38.0%
4275176 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.55 38.0 2.95e-01 73.0% 40.4%
3259730 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 45.0 4.20e-01 87.6% 84.5%
5001314 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.55 41.0 2.99e-01 78.7% 29.8%
3416144 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.55 48.0 3.72e-01 100.0% 85.2%
4993405 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 36.0 3.86e-01 79.8% 80.0%
3510522 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.55 39.0 3.28e-01 76.4% 97.0%
4012542 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 40.0 2.79e-01 77.5% 46.2%
5050977 328.5.1.1 a+b two layers › IF3-like › SirA-like › SirA-like › TusA 0.54 38.0 3.96e-01 78.7% 78.6%
3499160 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 39.0 2.52e-01 77.5% 38.0%
2898325 271.1.1.2 beta barrels › GFP-like › GFP-like › GFP-like 0.52 39.0 2.71e-01 78.7% 96.1%
5055353 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 40.0 3.60e-01 85.4% 100.0%
3504294 1.1.7.27 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 0.51 39.0 3.95e-01 85.4% 82.2%
3594363 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 39.0 2.53e-01 83.1% 28.3%
5392 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.51 42.0 3.17e-01 91.0% 53.9%
4945243 325.1.6.4 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase 0.51 40.0 3.40e-01 88.8% 96.2%
4013267 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 36.0 2.57e-01 76.4% 93.4%