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OP172751.1__WAX11022.1__BX788P2_00028__00028

Bact-Vir

OP172751.1__WAX11022.1__BX788P2_00028__00028

Identity

Accession:
OP172751 ↗
Kingdom:
phage

Quality

93.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.68 58.0 5.16e-01 100.0% 73.7%
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 44.0 3.12e-01 92.2% 22.0%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.65 53.0 4.08e-01 100.0% 94.1%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.64 56.0 3.59e-01 98.0% 98.7%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.61 52.0 4.33e-01 98.0% 60.6%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.60 44.0 3.76e-01 82.4% 48.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 50.0 4.18e-01 98.0% 62.0%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 40.0 2.54e-01 76.5% 20.5%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 49.0 3.40e-01 100.0% 37.1%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 49.0 3.37e-01 100.0% 35.3%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.56 45.0 3.07e-01 100.0% 29.7%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 42.0 3.09e-01 92.2% 49.2%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 2.89e-01 82.4% 36.4%
3fhlA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 37.0 2.57e-01 70.6% 40.2%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.55 42.0 3.53e-01 98.0% 46.8%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 46.0 2.85e-01 100.0% 27.6%
4zxwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 41.0 2.86e-01 82.4% 79.7%
4d0qA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 45.0 3.25e-01 98.0% 54.0%
3tdnA00 3.40.50.12600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 3.08e-01 80.4% 68.6%
2gqtA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 40.0 3.15e-01 98.0% 35.5%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 39.0 3.29e-01 82.4% 92.7%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.53 39.0 2.73e-01 80.4% 71.5%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.79e-01 100.0% 53.1%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 35.0 3.47e-01 92.2% 63.6%
3f0zA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.53 41.0 3.31e-01 96.1% 100.0%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.52 42.0 3.48e-01 92.2% 57.3%
3uoxB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.57e-01 86.3% 61.7%
2memA00 3.90.1150.190 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › SLED domain 0.52 42.0 3.40e-01 100.0% 92.4%
3trkA01 3.90.70.110 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Alphavirus nsP2 protease domain 0.52 43.0 3.31e-01 100.0% 53.3%
1rp5A03 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.59e-01 98.0% 98.9%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 42.0 3.15e-01 98.0% 32.9%
5exvC00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 45.0 3.17e-01 100.0% 60.6%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 40.0 3.04e-01 100.0% 46.8%
1iqzA00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.56e-01 92.2% 86.4%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 3.15e-01 98.0% 52.0%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 2.98e-01 100.0% 74.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3476488 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.79 51.0 3.89e-01 100.0% 30.9%
5014684 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 64.0 6.18e-01 100.0% 89.7%
3607227 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.71 56.0 5.72e-01 88.2% 98.0%
3600531 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.69 56.0 5.58e-01 92.2% 96.2%
3907036 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.69 57.0 4.94e-01 94.1% 97.5%
5027447 312.1.1.0 a+b three layers › HIT-like › HIT-related › HIT-related 0.68 46.0 3.33e-01 100.0% 24.8%
3226061 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.68 56.0 4.94e-01 92.2% 96.0%
2323826 4187.2.1.1 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.68 56.0 5.02e-01 100.0% 66.7%
3799886 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.67 52.0 4.71e-01 86.3% 100.0%
3629469 304.4.1.53 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › R1_ABCA1 0.67 55.0 4.70e-01 94.1% 87.1%
3947552 4261.1.1.1 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C 0.66 44.0 3.64e-01 100.0% 36.8%
3397248 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.66 55.0 4.51e-01 94.1% 97.9%
4963984 304.8.1.9 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.66 54.0 4.72e-01 94.1% 100.0%
4940035 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 49.0 3.81e-01 80.4% 80.9%
3866131 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.66 55.0 4.79e-01 96.1% 96.2%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 52.0 5.29e-01 100.0% 96.0%
4003497 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.65 53.0 3.79e-01 98.0% 30.6%
3167354 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.64 54.0 4.86e-01 98.0% 82.2%
3666791 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 55.0 5.57e-01 100.0% 100.0%
3267835 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.63 53.0 4.27e-01 98.0% 55.2%
3671314 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 51.0 3.29e-01 92.2% 28.7%
5052835 205.1.1.21 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_16 0.62 44.0 2.84e-01 76.5% 38.4%
3856159 261.1.1.1 a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.62 46.0 2.58e-01 80.4% 12.9%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 51.0 4.57e-01 96.1% 98.7%
3648991 2492.1.1.39 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase 0.61 52.0 3.90e-01 96.1% 68.5%
3603250 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 39.0 3.05e-01 82.4% 28.3%
3483062 221.1.1.116 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_6 0.61 51.0 3.97e-01 98.0% 74.2%
3774738 7529.1.1.11 a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.60 49.0 4.28e-01 98.0% 68.2%
3560901 601.19.1.20 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.60 48.0 4.41e-01 98.0% 77.3%
3857887 5094.1.1.11 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.60 48.0 4.39e-01 98.0% 77.3%
3420651 109.4.1.1521 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.59 50.0 3.06e-01 96.1% 28.2%
4022896 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.15e-01 84.3% 51.1%
3320698 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.59 50.0 2.80e-01 96.1% 15.0%
3645596 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.59 49.0 2.81e-01 96.1% 16.6%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.58 45.0 4.61e-01 100.0% 100.0%
4944155 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 43.0 3.15e-01 82.4% 27.7%
4867320 221.1.1.66 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PIK3CG_ABD 0.58 48.0 3.98e-01 100.0% 80.4%
4206173 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.58 46.0 4.06e-01 100.0% 88.9%
3439118 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.58 49.0 2.78e-01 96.1% 15.8%
3965593 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 48.0 4.19e-01 100.0% 97.6%
3896329 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.56 46.0 2.54e-01 94.1% 32.1%
None 0.56 45.0 2.45e-01 94.1% 25.2%
5062477 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 49.0 4.12e-01 100.0% 85.9%
5074894 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.55 44.0 2.89e-01 98.0% 17.9%
3616681 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.05e-01 98.0% 92.5%
4599086 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 42.0 3.77e-01 100.0% 89.9%
3974610 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.54 44.0 3.55e-01 96.1% 70.0%
4015865 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 40.0 2.81e-01 82.4% 85.5%
4275354 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.54 43.0 3.13e-01 90.2% 88.4%
3686341 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.54 44.0 2.48e-01 94.1% 18.8%
3607139 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.54 45.0 2.98e-01 100.0% 63.9%
3566641 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 43.0 2.37e-01 92.2% 30.4%
3984933 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.54 39.0 3.41e-01 84.3% 82.2%
5011866 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.53 45.0 3.01e-01 100.0% 28.5%
4654230 221.1.4.1 a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › SLBB 0.53 40.0 3.62e-01 98.0% 57.3%
4231408 371.1.1.1 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1 0.52 38.0 2.93e-01 80.4% 87.3%
4939413 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.52 36.0 3.63e-01 92.2% 70.0%
3196883 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.52 42.0 3.17e-01 98.0% 36.0%
3926768 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.52 40.0 2.48e-01 84.3% 24.9%
3624854 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.52 44.0 3.66e-01 98.0% 90.5%
4382285 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.52 44.0 2.91e-01 100.0% 40.0%
1106820 224.1.1.1 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.52 42.0 3.15e-01 98.0% 32.9%
4994376 3457.1.1.3 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II 0.50 37.0 2.44e-01 80.4% 60.4%
3339622 2003.1.5.342 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TYW2_N_2 0.50 39.0 2.67e-01 88.2% 27.0%