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OP172752.1__WBK39594.1__CB452P1_000010__00010
Bact-VirOP172752.1__WBK39594.1__CB452P1_000010__00010
Identity
- Accession:
- OP172752 ↗
- Kingdom:
- phage
Quality
80.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-68
Domain cluster:
rep: MN234168.1__QFG08733.1__PBI_INGRID_61__00061__D29-92
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.69 | 49.0 | 5.32e-01 | 93.9% | 90.9% |
| 1aqcB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 52.0 | 4.24e-01 | 89.4% | 95.9% |
| 2wweA01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 38.0 | 3.36e-01 | 90.9% | 41.3% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.59 | 43.0 | 4.13e-01 | 78.8% | 79.2% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.58 | 42.0 | 2.75e-01 | 75.8% | 66.1% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.66e-01 | 78.8% | 73.1% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 3.15e-01 | 90.9% | 35.5% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.56 | 40.0 | 3.59e-01 | 72.7% | 78.4% |
| 2aw4Z00 | 4.10.830.30 | Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 | 0.55 | 39.0 | 3.93e-01 | 77.3% | 82.9% |
| 7byjA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.92e-01 | 87.9% | 96.8% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.13e-01 | 72.7% | 62.6% |
| 2h7fX02 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.53 | 44.0 | 2.94e-01 | 89.4% | 64.3% |
| 1wi0A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 38.0 | 3.17e-01 | 75.8% | 68.1% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 39.0 | 3.85e-01 | 80.3% | 87.3% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.02e-01 | 71.2% | 52.4% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.51 | 34.0 | 2.88e-01 | 71.2% | 79.8% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 42.0 | 3.40e-01 | 89.4% | 96.7% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.09e-01 | 75.8% | 85.2% |
| 5inwA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 30.0 | 2.67e-01 | 83.3% | 35.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083204 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.84 | 60.0 | 6.80e-01 | 89.4% | 98.0% |
| 3849360 | 376.1.3.23 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF | 0.75 | 59.0 | 5.65e-01 | 90.9% | 74.7% |
| 4046934 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.73 | 44.0 | 5.26e-01 | 78.8% | 88.9% |
| 4407558 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.65 | 48.0 | 5.06e-01 | 78.8% | 96.7% |
| 4154378 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.65 | 50.0 | 5.08e-01 | 81.8% | 96.9% |
| 4532986 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.63 | 47.0 | 4.82e-01 | 80.3% | 95.4% |
| 3859768 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.62 | 52.0 | 3.89e-01 | 95.5% | 76.0% |
| 4945655 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 46.0 | 3.99e-01 | 78.8% | 82.0% |
| 4002566 | 109.4.1.574 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOC3p | 0.60 | 42.0 | 2.68e-01 | 72.7% | 56.1% |
| 1834407 | 3218.1.1.1 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 | 0.59 | 32.0 | 3.03e-01 | 72.7% | 44.9% |
| 3923869 | 376.1.3.11 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 | 0.57 | 41.0 | 3.48e-01 | 78.8% | 94.2% |
| 3459249 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 33.0 | 2.72e-01 | 75.8% | 32.5% |
| 4944757 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 31.0 | 3.66e-01 | 72.7% | 82.2% |
| 3370568 | 4111.1.1.0 ↗ | a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like | 0.55 | 34.0 | 2.99e-01 | 83.3% | 39.0% |
| 5045117 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 30.0 | 3.18e-01 | 71.2% | 60.0% |
| 3332006 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.54 | 36.0 | 2.92e-01 | 87.9% | 38.3% |
| 3517883 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.54 | 35.0 | 3.97e-01 | 75.8% | 90.0% |
| 5071984 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 2.91e-01 | 72.7% | 65.7% |
| 4949606 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 45.0 | 3.04e-01 | 93.9% | 67.5% |
| 5027042 | 304.19.1.1 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha | 0.53 | 40.0 | 3.58e-01 | 78.8% | 88.6% |
| 3622393 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 31.0 | 3.39e-01 | 74.2% | 69.2% |
| 3587894 | 101.1.2.49 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C | 0.53 | 48.0 | 3.50e-01 | 100.0% | 97.1% |
| 3517917 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 38.0 | 3.90e-01 | 80.3% | 100.0% |
| 3289064 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.52 | 37.0 | 2.86e-01 | 74.2% | 79.3% |
| 150973 | 4967.1.1.5 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › RdRP_3 | 0.52 | 35.0 | 2.55e-01 | 71.2% | 69.9% |
| 4851507 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 35.0 | 2.79e-01 | 71.2% | 70.5% |
| 4025375 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.51 | 32.0 | 2.66e-01 | 78.8% | 35.7% |
| 3165734 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.50 | 34.0 | 3.30e-01 | 100.0% | 60.3% |
| 3574056 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.50 | 42.0 | 2.82e-01 | 92.4% | 94.0% |