←Back to structures

OP172752.1__WBK39607.1__CB452P1_000023__00023

Bact-Vir

OP172752.1__WBK39607.1__CB452P1_000023__00023

Identity

Accession:
OP172752 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_CB452P1

TaxID: 2968621

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-85
PDB
Domain cluster: rep: IMGVR_UViG_7000000193_000218-7000000193-C1910322__gene_186167__D8-55
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 67.0 6.49e-01 100.0% 86.6%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 67.0 5.71e-01 98.4% 77.9%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 61.0 5.34e-01 96.7% 97.8%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 59.0 5.85e-01 100.0% 92.3%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 61.0 5.52e-01 100.0% 94.0%
4ifdI02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 60.0 4.57e-01 100.0% 65.3%
2kcmA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 59.0 5.59e-01 100.0% 87.8%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 59.0 5.80e-01 100.0% 95.5%
4tquS02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 52.0 5.20e-01 100.0% 82.8%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 59.0 5.80e-01 100.0% 95.4%
1vq8X00 3.10.440.10 Alpha Beta › Roll › Ribosomal Protein L31e; Chain: W; › Ribosomal protein L31 0.66 57.0 5.26e-01 100.0% 98.8%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 57.0 5.45e-01 98.4% 85.7%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 55.0 4.74e-01 100.0% 60.8%
3nqiA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.64 54.0 5.37e-01 100.0% 92.3%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.64 54.0 4.95e-01 100.0% 84.9%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 56.0 5.47e-01 100.0% 98.5%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.63 55.0 5.16e-01 100.0% 92.0%
1k3rA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 47.0 4.76e-01 100.0% 88.1%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 51.0 5.04e-01 100.0% 89.2%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 51.0 4.29e-01 100.0% 63.2%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 35.0 3.91e-01 100.0% 93.2%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.53e-01 100.0% 53.3%
3adyA00 3.55.50.60 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › DotD protein 0.54 45.0 3.93e-01 100.0% 89.2%
1ojqA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 45.0 3.17e-01 100.0% 38.7%
4e9oX00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.53 40.0 2.87e-01 90.2% 55.2%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.51 41.0 4.14e-01 98.4% 96.8%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.50 39.0 2.78e-01 86.9% 73.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4606649 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.85 77.0 7.43e-01 100.0% 94.1%
4942314 2.1.1.11 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.75 67.0 5.33e-01 100.0% 50.8%
5000620 2.1.1.11 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.73 64.0 5.32e-01 100.0% 55.5%
4002805 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 64.0 6.09e-01 100.0% 85.7%
4948008 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 63.0 5.55e-01 100.0% 68.9%
4232512 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.71 63.0 5.70e-01 98.4% 80.7%
3980538 2.7.1.1 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.71 63.0 5.88e-01 100.0% 90.7%
4041729 2.1.1.78 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB 0.71 61.0 5.27e-01 96.7% 65.3%
4964989 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.70 62.0 5.13e-01 100.0% 60.0%
4932551 2.1.1.11 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.70 62.0 5.43e-01 100.0% 70.0%
5004633 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 59.0 5.17e-01 100.0% 65.6%
4024725 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 59.0 5.94e-01 96.7% 100.0%
5071570 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 59.0 5.43e-01 100.0% 78.8%
4950866 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.67 57.0 5.07e-01 100.0% 65.6%
3927708 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 58.0 5.14e-01 100.0% 76.7%
5030021 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 57.0 5.49e-01 100.0% 85.7%
369 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 49.0 4.71e-01 98.4% 71.8%
4951886 3174.4.1.0 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.64 40.0 3.49e-01 98.4% 42.2%
146269 2.18.1.0 ↗ beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins 0.64 54.0 5.34e-01 100.0% 90.9%
3254416 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 54.0 4.45e-01 100.0% 64.2%
4956417 259.1.1.2 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.64 55.0 4.94e-01 98.4% 96.5%
3273216 3940.1.1.0 ↗ a+b two layers › Spliceosomal helicase Aquarius insert domain › Spliceosomal helicase Aquarius insert domain › Spliceosomal helicase Aquarius insert domain 0.63 53.0 5.36e-01 100.0% 96.7%
3251735 2.1.1.137 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF6748 0.61 52.0 4.68e-01 100.0% 95.6%
5047472 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 50.0 4.91e-01 96.7% 86.2%
143318 2.1.1.114 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › AceES-2 0.59 51.0 4.29e-01 100.0% 63.2%
3481313 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 3.97e-01 100.0% 48.1%
4999027 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.55e-01 96.7% 98.7%
4946332 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 47.0 4.78e-01 100.0% 98.3%
4646733 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 48.0 4.18e-01 100.0% 98.0%
3829560 1.1.11.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.56 46.0 3.90e-01 100.0% 93.9%
3942645 3070.1.1.0 ↗ a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.54 43.0 3.73e-01 91.8% 80.0%
3832696 1.1.11.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.54 44.0 3.75e-01 100.0% 96.5%
1401257 2.1.1.21 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.54 43.0 3.87e-01 100.0% 61.7%
3813848 1.1.11.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.53 44.0 3.83e-01 100.0% 97.1%
3315718 1.1.11.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.53 44.0 3.88e-01 100.0% 98.0%
3804183 1.1.11.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 0.53 43.0 3.75e-01 100.0% 98.2%
3419133 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.53 42.0 3.66e-01 100.0% 83.5%
3276401 5.1.3.149 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_2, Kelch_KLHDC2_KLHL20_DRC7 0.52 42.0 2.79e-01 96.7% 26.6%
1030850 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.52 42.0 4.16e-01 100.0% 95.4%
3813512 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.52 41.0 3.62e-01 100.0% 88.2%
4978175 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 37.0 2.81e-01 82.0% 82.3%
2167777 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.51 32.0 2.95e-01 100.0% 43.8%