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OP172752.1__WBK39636.1__CB452P1_000052__00052

Bact-Vir

OP172752.1__WBK39636.1__CB452P1_000052__00052

Identity

Accession:
OP172752 ↗
Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 68-130
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tc2B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.69 59.0 4.37e-01 100.0% 97.7%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 52.0 4.42e-01 84.1% 70.2%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 54.0 4.41e-01 88.9% 78.8%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.97e-01 85.7% 92.0%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 50.0 3.59e-01 90.5% 99.5%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 51.0 4.14e-01 88.9% 96.6%
2b1xA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 51.0 4.11e-01 90.5% 97.6%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 49.0 4.10e-01 88.9% 69.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 5.01e-01 100.0% 88.3%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.61 51.0 3.80e-01 98.4% 34.5%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 49.0 4.15e-01 88.9% 98.1%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 47.0 3.73e-01 87.3% 81.0%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.60 46.0 3.92e-01 85.7% 78.7%
1vf7F01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 52.0 4.46e-01 100.0% 82.4%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.59 46.0 3.73e-01 88.9% 84.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.60e-01 100.0% 79.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.45e-01 100.0% 81.3%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.58 50.0 4.63e-01 100.0% 96.4%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 48.0 3.83e-01 100.0% 44.0%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.57 49.0 4.37e-01 100.0% 77.4%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 46.0 2.98e-01 90.5% 88.4%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.49e-01 95.2% 91.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 44.0 3.83e-01 90.5% 92.7%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 49.0 4.14e-01 100.0% 63.4%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 46.0 3.36e-01 100.0% 39.7%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 49.0 4.38e-01 100.0% 72.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 45.0 3.74e-01 88.9% 50.0%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 49.0 2.98e-01 100.0% 16.1%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 44.0 3.76e-01 88.9% 98.2%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.56 46.0 3.94e-01 100.0% 83.8%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 41.0 3.06e-01 82.5% 85.6%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 42.0 3.42e-01 88.9% 95.6%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 3.58e-01 96.8% 76.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.04e-01 92.1% 79.7%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.47e-01 88.9% 94.4%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.12e-01 93.7% 84.3%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.23e-01 85.7% 97.9%
1iwlA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 46.0 3.36e-01 96.8% 81.9%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.27e-01 92.1% 93.2%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 2.89e-01 100.0% 28.5%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.53 40.0 3.14e-01 87.3% 64.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.05e-01 88.9% 83.1%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.13e-01 100.0% 70.8%
1gd7A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.27e-01 79.4% 56.0%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.28e-01 100.0% 51.9%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.02e-01 96.8% 83.3%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.10e-01 84.1% 86.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.52 39.0 3.62e-01 87.3% 90.9%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 39.0 3.34e-01 85.7% 94.7%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.22e-01 100.0% 55.4%
1ryp100 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 42.0 3.01e-01 98.4% 86.5%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 38.0 3.16e-01 84.1% 94.4%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.22e-01 93.7% 82.4%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 42.0 3.11e-01 100.0% 75.3%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924545 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.68 48.0 3.94e-01 76.2% 57.5%
3236050 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.66 47.0 3.97e-01 76.2% 60.9%
3278853 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.47e-01 93.7% 89.2%
4200316 220.1.1.191 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.65 52.0 3.92e-01 87.3% 67.1%
5075805 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.99e-01 92.1% 89.1%
4182428 220.1.1.191 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28624 0.63 51.0 3.87e-01 88.9% 70.0%
4011604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 54.0 5.20e-01 100.0% 88.0%
3233672 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 54.0 4.74e-01 100.0% 82.0%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.63 55.0 5.13e-01 100.0% 81.2%
4486119 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.62 50.0 3.89e-01 88.9% 82.1%
5009719 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.62 50.0 3.83e-01 88.9% 80.0%
1778160 109.1.1.6 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.62 52.0 3.52e-01 98.4% 25.0%
3994778 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.81e-01 88.9% 62.6%
3514191 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.26e-01 100.0% 56.0%
4013311 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.61 54.0 3.64e-01 98.4% 59.1%
3658750 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.61 48.0 3.96e-01 88.9% 80.0%
3792948 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 4.08e-01 88.9% 80.0%
3979552 219.1.1.90 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF1287 0.61 52.0 3.86e-01 98.4% 35.4%
3278614 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.61 49.0 3.82e-01 88.9% 82.9%
3507639 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.61 53.0 5.14e-01 100.0% 94.3%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.60 51.0 4.79e-01 96.8% 88.7%
3370313 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.60 47.0 3.59e-01 90.5% 57.6%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.60 51.0 4.64e-01 100.0% 76.7%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 53.0 5.04e-01 100.0% 90.7%
5028909 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 49.0 3.02e-01 100.0% 54.9%
3680769 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 53.0 4.17e-01 100.0% 85.4%
3315951 220.1.1.86 beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.59 45.0 4.30e-01 87.3% 92.4%
4263827 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.57e-01 87.3% 82.1%
3351841 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.58 46.0 3.76e-01 90.5% 73.6%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 51.0 4.29e-01 100.0% 61.8%
127 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.58 50.0 4.26e-01 100.0% 66.1%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.67e-01 98.4% 92.0%
3647116 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.58 45.0 3.72e-01 88.9% 77.6%
4296071 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.37e-01 87.3% 60.6%
396031 4.22.1.1 beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.58 48.0 4.26e-01 100.0% 70.3%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 49.0 4.30e-01 100.0% 70.0%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 49.0 4.63e-01 100.0% 96.2%
4616814 1.1.7.79 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.57 51.0 4.40e-01 100.0% 92.0%
3347865 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.57 44.0 3.71e-01 88.9% 78.3%
4462290 1.1.7.79 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND 0.57 50.0 4.33e-01 100.0% 85.0%
3605468 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.57 45.0 3.12e-01 88.9% 71.1%
4268386 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.45e-01 96.8% 82.9%
4854964 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 50.0 4.53e-01 100.0% 83.7%
3726608 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 49.0 4.01e-01 100.0% 77.5%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.56 47.0 4.16e-01 100.0% 67.0%
4969694 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.56 47.0 3.55e-01 98.4% 96.5%
3596057 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 45.0 3.18e-01 88.9% 77.5%
4602962 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.55 38.0 2.88e-01 71.4% 61.3%
3239261 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 46.0 2.92e-01 100.0% 22.3%
3918382 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.55 44.0 2.63e-01 93.7% 82.9%
5072494 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.54 43.0 3.19e-01 90.5% 89.9%
5075159 844.1.1.2 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.53 44.0 3.28e-01 92.1% 86.7%
3280741 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 45.0 3.64e-01 100.0% 48.9%
3176450 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.53 43.0 3.68e-01 93.7% 60.6%
4957228 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 45.0 3.61e-01 96.8% 96.2%
4959581 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 42.0 3.05e-01 88.9% 30.5%
3397845 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.86e-01 96.8% 67.6%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 42.0 4.13e-01 93.7% 97.1%
3935249 11.1.1.955 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.52 44.0 3.86e-01 100.0% 78.0%
3413648 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.13e-01 87.3% 79.3%
2713759 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 41.0 3.81e-01 93.7% 72.4%
1550955 4.1.1.15 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.51 42.0 3.68e-01 100.0% 57.9%
3257607 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.09e-01 98.4% 93.3%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 42.0 4.17e-01 96.8% 92.3%
3961371 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 41.0 3.90e-01 96.8% 85.0%
5066776 221.1.2.20 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e 0.50 45.0 3.65e-01 98.4% 68.7%
3663984 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.50 38.0 2.84e-01 88.9% 57.9%
D2 high residues 132-190
PDB
D3 medium residues 1-60
PDB