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OP172753.1__WAX11071.1__CB457P1_00033__00033

Bact-Vir

OP172753.1__WAX11071.1__CB457P1_00033__00033

Identity

Accession:
OP172753 ↗
Kingdom:
phage

Quality

70.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-117
PDB
D2 high residues 181-371
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 71.4 1.40e-19 84.8% 71.6%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.55 29.0 3.43e-01 70.2% 72.9%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.52 26.0 3.27e-01 89.5% 77.9%
1hekA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.52 31.0 3.84e-01 87.4% 95.7%
4kt3A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 36.0 4.09e-01 84.3% 97.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030882 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.89 80.0 7.73e-01 100.0% 84.8%
4032310 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.74 46.0 5.12e-01 92.7% 77.3%
3941716 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.67 45.0 5.35e-01 86.4% 98.5%
3981280 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.66 47.0 5.31e-01 94.2% 95.2%
3963765 159.1.2.5 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.63 50.0 5.04e-01 96.9% 82.6%
3164789 159.1.2.5 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.58 45.0 4.86e-01 96.3% 94.5%
3256 612.1.1.6 alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins › Gag_p15 0.52 31.0 3.84e-01 87.4% 95.7%
D3 medium residues 120-180
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.76 63.0 5.21e-01 93.4% 60.0%
1yqgA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.73 49.0 3.98e-01 70.5% 44.2%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.72 52.0 4.39e-01 91.8% 45.2%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.71 56.0 5.12e-01 85.2% 79.7%
2dzlA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.69 51.0 5.03e-01 95.1% 74.2%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.68 61.0 3.94e-01 100.0% 54.6%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.68 49.0 4.44e-01 78.7% 98.9%
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.67 53.0 5.01e-01 91.8% 84.4%
2ahoB02 1.10.150.190 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 0.66 54.0 4.77e-01 90.2% 74.7%
2c4eA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.66 58.0 3.73e-01 100.0% 43.5%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.66 52.0 5.08e-01 90.2% 100.0%
1vm7B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.66 58.0 3.69e-01 100.0% 45.5%
2hlzA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.65 57.0 3.66e-01 100.0% 37.2%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.65 56.0 4.05e-01 100.0% 53.6%
6cnzF00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.64 56.0 4.19e-01 100.0% 64.6%
2ahrA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.64 43.0 3.63e-01 70.5% 47.2%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.64 52.0 4.70e-01 98.4% 94.5%
4e69A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 55.0 3.54e-01 100.0% 34.8%
3jr7A01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.63 50.0 4.14e-01 90.2% 97.5%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 39.0 3.78e-01 78.7% 57.6%
3vasA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 55.0 3.57e-01 100.0% 43.6%
3triA02 1.10.3730.10 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like 0.63 48.0 4.06e-01 82.0% 64.1%
4du5B00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 53.0 3.43e-01 96.7% 42.7%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.62 51.0 5.03e-01 93.4% 98.5%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.62 53.0 3.43e-01 100.0% 43.0%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 42.0 4.27e-01 72.1% 77.4%
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.61 52.0 4.19e-01 100.0% 64.6%
1l5aA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.61 53.0 3.69e-01 96.7% 38.8%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 37.0 4.17e-01 73.8% 83.0%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 42.0 3.97e-01 80.3% 68.4%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.58 43.0 4.24e-01 88.5% 74.6%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.57 44.0 4.23e-01 88.5% 76.4%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.57 47.0 4.78e-01 98.4% 100.0%
5t3eB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 46.0 3.13e-01 93.4% 37.1%
1v9mA02 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.56 43.0 3.73e-01 85.2% 80.2%
2plrA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 45.0 3.28e-01 100.0% 95.3%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 38.0 2.87e-01 75.4% 93.6%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 43.0 4.51e-01 86.9% 100.0%
1uxdA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 33.0 3.44e-01 72.1% 64.4%
3r1vA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 39.0 3.12e-01 75.4% 96.8%
5f7vA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 42.0 2.65e-01 91.8% 59.0%
5dicA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.53 41.0 3.50e-01 91.8% 48.7%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 3.43e-01 100.0% 43.8%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.53 42.0 3.02e-01 86.9% 47.2%
3l6gA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 3.23e-01 91.8% 93.3%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 43.0 3.52e-01 95.1% 87.9%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.42e-01 95.1% 61.7%
2q0yA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.20e-01 90.2% 89.9%
4ol8B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 39.0 3.56e-01 88.5% 65.6%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047300 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.80 54.0 5.31e-01 72.1% 66.2%
3737617 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.78 62.0 6.30e-01 100.0% 90.0%
4964973 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.75 52.0 5.80e-01 73.8% 100.0%
4319059 103.5.1.2 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.74 59.0 5.89e-01 90.2% 85.7%
3287843 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.73 54.0 3.66e-01 83.6% 22.3%
3702894 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.73 55.0 5.92e-01 90.2% 98.0%
4147304 103.5.1.2 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.73 61.0 6.15e-01 100.0% 95.0%
4665947 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.72 58.0 5.91e-01 90.2% 93.1%
4968900 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 57.0 5.97e-01 95.1% 100.0%
2512953 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.70 57.0 5.90e-01 95.1% 98.2%
5040685 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.69 58.0 3.88e-01 98.4% 95.8%
3928680 2485.1.1.67 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT 0.69 50.0 3.55e-01 88.5% 24.6%
4995676 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 55.0 5.29e-01 86.9% 77.1%
4992168 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 56.0 4.92e-01 95.1% 61.1%
5055210 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.68 53.0 5.18e-01 83.6% 93.8%
4238749 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.68 52.0 3.95e-01 85.2% 40.3%
3297509 148.1.3.318 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28551 0.67 56.0 5.43e-01 96.7% 94.3%
4986460 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.67 58.0 4.49e-01 100.0% 43.6%
3800965 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 47.0 3.71e-01 73.8% 60.8%
3588797 4084.1.1.0 alpha bundles › ChaB-like › ChaB-like › ChaB-like 0.66 54.0 5.37e-01 98.4% 86.2%
4976690 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 50.0 5.35e-01 86.9% 100.0%
3966782 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.66 47.0 3.01e-01 75.4% 21.4%
4144571 221.1.2.11 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4 0.65 49.0 4.18e-01 90.2% 47.3%
5042339 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.65 55.0 3.72e-01 100.0% 53.3%
5071201 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.64 56.0 3.61e-01 100.0% 36.5%
3962545 321.1.1.0 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase 0.64 54.0 3.24e-01 95.1% 66.8%
1719256 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.64 55.0 3.92e-01 100.0% 44.4%
4984124 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.62 48.0 4.76e-01 91.8% 80.0%
3249342 103.1.1.22 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl 0.62 49.0 4.94e-01 95.1% 90.0%
3576589 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.61 52.0 3.82e-01 100.0% 62.8%
4253460 321.1.1.7 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.60 48.0 2.97e-01 88.5% 55.2%
5000806 251.1.1.1 a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS 0.59 41.0 3.31e-01 72.1% 84.3%
3868871 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.59 50.0 3.52e-01 96.7% 91.2%
3277496 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 43.0 2.76e-01 78.7% 24.1%
4987541 611.8.1.0 alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 0.57 44.0 3.75e-01 86.9% 76.4%
5044070 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 45.0 3.94e-01 86.9% 72.2%
4979165 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.55 41.0 2.98e-01 82.0% 53.3%
4032615 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.54 47.0 3.59e-01 96.7% 49.6%
3705785 3050.1.1.30 alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › TMEM254 0.54 46.0 3.98e-01 95.1% 85.3%
3391285 108.2.1.1 alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP 0.53 40.0 3.36e-01 86.9% 47.8%
4575406 2007.1.14.7 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.53 44.0 3.02e-01 93.4% 28.4%