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OP172774.1__WAX12049.1__CS229P3_00012__00012
Bact-VirOP172774.1__WAX12049.1__CS229P3_00012__00012
Identity
- Accession:
- OP172774 ↗
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-82
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1in0A01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 37.0 | 3.85e-01 | 90.7% | 58.6% |
| 2w9mB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.65 | 42.0 | 4.11e-01 | 98.7% | 60.5% |
| 4m0mA04 | 1.20.1270.440 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 55.0 | 4.76e-01 | 96.0% | 85.5% |
| 2lquA01 | 1.20.1420.40 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Decorin-binding protein | 0.63 | 51.0 | 4.03e-01 | 96.0% | 42.9% |
| 2vqcA00 | 1.10.10.1470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like | 0.63 | 34.0 | 3.56e-01 | 96.0% | 55.7% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.62 | 40.0 | 3.80e-01 | 97.3% | 54.5% |
| 7cj3A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 48.0 | 3.31e-01 | 97.3% | 83.3% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 33.0 | 3.07e-01 | 94.7% | 48.9% |
| 4ldgA00 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.52 | 36.0 | 2.65e-01 | 73.3% | 93.1% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.52 | 46.0 | 3.58e-01 | 100.0% | 54.5% |
| 2yrrA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 44.0 | 3.91e-01 | 98.7% | 85.6% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 39.0 | 2.89e-01 | 85.3% | 93.5% |
| 5z9iA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 38.0 | 2.41e-01 | 80.0% | 26.2% |
| 2bkwA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 47.0 | 3.94e-01 | 100.0% | 86.7% |
| 1jtaA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.50 | 42.0 | 2.79e-01 | 98.7% | 68.7% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719561 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.61 | 51.0 | 3.45e-01 | 92.0% | 52.9% |
| 3613472 | 5046.1.1.45 ↗ | extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ODAD1_CC | 0.61 | 44.0 | 3.68e-01 | 100.0% | 43.0% |
| 5053794 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.61 | 55.0 | 4.54e-01 | 100.0% | 88.5% |
| 3445163 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 41.0 | 4.54e-01 | 96.0% | 98.2% |
| 3517171 | 604.8.1.3 ↗ | alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo › Gpi1 | 0.60 | 52.0 | 3.83e-01 | 100.0% | 75.7% |
| 4968989 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 31.0 | 3.03e-01 | 96.0% | 47.1% |
| 3954068 | 633.23.1.7 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › DUF5336 | 0.55 | 46.0 | 4.04e-01 | 100.0% | 76.0% |
| 4177929 | 1015.1.1.6 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Lycopene_cyc | 0.53 | 46.0 | 3.27e-01 | 96.0% | 40.4% |
| 3907772 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.53 | 40.0 | 2.84e-01 | 86.7% | 97.5% |
| 5047709 | 1015.1.1.2 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Caroten_synth | 0.51 | 44.0 | 3.53e-01 | 100.0% | 74.8% |
D2
high
residues 122-216
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ay5A02 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.63 | 55.0 | 4.69e-01 | 100.0% | 87.3% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 55.0 | 4.30e-01 | 98.9% | 61.1% |
| 1eo0A00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.62 | 45.0 | 4.92e-01 | 82.1% | 96.1% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.60 | 46.0 | 4.56e-01 | 84.2% | 83.5% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.60 | 44.0 | 4.54e-01 | 77.9% | 84.1% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.59 | 44.0 | 4.23e-01 | 83.2% | 68.1% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.59 | 40.0 | 4.45e-01 | 80.0% | 94.4% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 40.0 | 4.30e-01 | 88.4% | 84.1% |
| 2hfsA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.57 | 50.0 | 4.15e-01 | 100.0% | 57.0% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 45.0 | 4.22e-01 | 86.3% | 77.5% |
| 4bjqA00 | 1.10.150.770 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.56 | 35.0 | 3.77e-01 | 83.2% | 75.6% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.54 | 40.0 | 4.33e-01 | 80.0% | 100.0% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.52 | 39.0 | 3.49e-01 | 82.1% | 64.5% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.87e-01 | 83.2% | 87.3% |
| 3ln6A01 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.50 | 42.0 | 2.82e-01 | 94.7% | 87.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3437255 | 611.7.1.1 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › MLKL_N | 0.61 | 47.0 | 4.40e-01 | 84.2% | 93.3% |
| 3974456 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.59 | 39.0 | 4.28e-01 | 72.6% | 84.0% |
| 4027157 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.59 | 45.0 | 3.27e-01 | 83.2% | 43.7% |
| 4941277 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.56 | 43.0 | 4.54e-01 | 82.1% | 100.0% |
| 3284449 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.55 | 37.0 | 3.85e-01 | 74.7% | 76.5% |
| 3203375 | 219.1.1.129 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 | 0.54 | 47.0 | 4.34e-01 | 98.9% | 83.6% |
| 4152787 | 601.14.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin | 0.54 | 40.0 | 3.33e-01 | 78.9% | 71.7% |
| 4980107 | 3447.1.1.4 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › PEMT | 0.53 | 43.0 | 3.39e-01 | 90.5% | 75.0% |
| 3723754 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.52 | 37.0 | 3.49e-01 | 73.7% | 87.0% |
| 1674680 | 4085.1.1.1 ↗ | alpha arrays › RbcX-like › RbcX-like › RbcX-like › RbcX | 0.52 | 40.0 | 3.79e-01 | 85.3% | 78.0% |