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OP172778.1__WAX12283.1__CS266P4_00015__00015
Bact-VirOP172778.1__WAX12283.1__CS266P4_00015__00015
Identity
- Accession:
- OP172778 ↗
- Kingdom:
- phage
Quality
93.5
mean pLDDT
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-102
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 38.0 | 1.40e-09 | 46.0% | 73.9% |
D2
high
residues 113-159
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5vmzA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.81 | 59.0 | 6.33e-01 | 100.0% | 92.5% |
| 2kd0A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.72 | 54.0 | 4.76e-01 | 83.0% | 95.8% |
| 4dbgA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.70 | 54.0 | 4.51e-01 | 85.1% | 91.5% |
| 7sbiA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 51.0 | 4.52e-01 | 85.1% | 97.1% |
| 2fjrA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 51.0 | 4.43e-01 | 87.2% | 88.2% |
| 4ii2A06 | 3.10.290.60 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-activating enzyme E1, UFD domain | 0.65 | 49.0 | 3.99e-01 | 85.1% | 97.9% |
| 1wjnA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.64 | 48.0 | 3.95e-01 | 87.2% | 84.5% |
| 1v5oA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 47.0 | 3.76e-01 | 85.1% | 73.5% |
| 1wx8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 47.0 | 3.85e-01 | 85.1% | 71.9% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 46.0 | 3.78e-01 | 83.0% | 75.3% |
| 7eebI01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 45.0 | 3.09e-01 | 85.1% | 28.4% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.56 | 38.0 | 4.12e-01 | 100.0% | 100.0% |
| 3mteA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 43.0 | 2.85e-01 | 91.5% | 29.7% |
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.54 | 44.0 | 4.04e-01 | 100.0% | 94.3% |
| 3votB02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 42.0 | 2.70e-01 | 91.5% | 42.3% |
| 2yweA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.13e-01 | 100.0% | 36.4% |
| 2a90A02 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.50 | 39.0 | 3.74e-01 | 100.0% | 100.0% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 43.0 | 3.11e-01 | 100.0% | 51.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3750234 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.88 | 65.0 | 6.64e-01 | 100.0% | 82.2% |
| 3796255 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.77 | 57.0 | 5.84e-01 | 100.0% | 84.4% |
| 3277842 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.68 | 47.0 | 4.41e-01 | 100.0% | 58.3% |
| 2813508 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.67 | 51.0 | 4.42e-01 | 85.1% | 89.5% |
| 3746790 | 386.1.1.25 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-H2C2_5 | 0.67 | 53.0 | 4.91e-01 | 100.0% | 70.0% |
| 3037398 | 304.51.1.5 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Csy4 | 0.63 | 41.0 | 3.49e-01 | 76.6% | 38.7% |
| 4963205 | 386.1.1.394 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF5810 | 0.63 | 54.0 | 4.96e-01 | 100.0% | 95.2% |
| 4964166 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 43.0 | 2.82e-01 | 85.1% | 83.4% |
| 4133804 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 41.0 | 4.26e-01 | 91.5% | 100.0% |
| 5053716 | 308.2.1.0 ↗ | a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain | 0.55 | 43.0 | 3.75e-01 | 89.4% | 93.3% |
| 143197 | 2005.1.1.54 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2, PF28410 | 0.55 | 41.0 | 2.77e-01 | 85.1% | 76.9% |
| 4965613 | 243.6.1.15 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF7122 | 0.54 | 43.0 | 3.50e-01 | 89.4% | 95.6% |