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OP172778.1__WAX12301.1__CS266P4_00033__00033

Bact-Vir

OP172778.1__WAX12301.1__CS266P4_00033__00033

Identity

Accession:
OP172778 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-80
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 54.0 4.72e-01 90.8% 53.5%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 47.0 4.14e-01 84.2% 46.0%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.70 47.0 3.63e-01 75.0% 31.5%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 47.0 4.12e-01 77.6% 46.2%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 47.0 3.93e-01 75.0% 41.2%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 51.0 3.72e-01 78.9% 32.2%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 52.0 4.39e-01 80.3% 51.2%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 50.0 4.22e-01 77.6% 52.3%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 52.0 4.29e-01 81.6% 47.8%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.67 54.0 5.40e-01 100.0% 85.0%
5nl8A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.67 52.0 3.94e-01 84.2% 85.2%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 51.0 4.35e-01 82.9% 55.3%
5dvyA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.66 47.0 4.00e-01 75.0% 46.0%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.66 46.0 4.08e-01 72.4% 89.9%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 47.0 3.93e-01 75.0% 51.5%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 49.0 4.38e-01 84.2% 56.0%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 46.0 3.92e-01 75.0% 51.2%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 46.0 3.74e-01 73.7% 44.1%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 44.0 3.87e-01 73.7% 45.8%
6nyoA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 51.0 3.80e-01 86.8% 82.4%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 48.0 3.68e-01 81.6% 36.2%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.63 43.0 3.60e-01 72.4% 77.3%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 43.0 3.55e-01 72.4% 41.8%
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.62 53.0 3.82e-01 96.1% 78.4%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 48.0 4.42e-01 81.6% 87.5%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.62 44.0 3.67e-01 75.0% 41.0%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 44.0 3.03e-01 75.0% 22.5%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 46.0 3.52e-01 78.9% 37.1%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 41.0 3.25e-01 72.4% 32.7%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 43.0 3.78e-01 73.7% 49.1%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 51.0 4.01e-01 92.1% 90.5%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.61 52.0 3.50e-01 100.0% 48.0%
2wqlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 41.0 3.28e-01 73.7% 34.9%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 42.0 3.77e-01 72.4% 89.4%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 41.0 3.48e-01 71.1% 43.8%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 49.0 3.50e-01 89.5% 65.8%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.42e-01 100.0% 45.0%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 42.0 3.78e-01 73.7% 93.0%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 45.0 3.02e-01 80.3% 73.7%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 48.0 3.96e-01 94.7% 78.4%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 40.0 3.38e-01 77.6% 42.6%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 51.0 3.28e-01 100.0% 33.6%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 3.40e-01 75.0% 42.7%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 37.0 3.16e-01 75.0% 40.2%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 46.0 3.49e-01 90.8% 78.8%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 39.0 3.27e-01 75.0% 39.2%
4hgzA02 2.20.25.570 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 36.0 3.93e-01 76.3% 85.0%
2b1xA01 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.55 47.0 3.12e-01 96.1% 59.7%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 43.0 3.51e-01 97.4% 75.3%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.52 39.0 3.28e-01 80.3% 49.2%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 3.46e-01 94.7% 75.8%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 42.0 3.05e-01 94.7% 77.0%
4jf6A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 35.0 2.51e-01 72.4% 24.7%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 2.96e-01 100.0% 71.1%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 41.0 3.31e-01 98.7% 94.4%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.50 37.0 3.20e-01 80.3% 78.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.76 42.0 4.80e-01 75.0% 74.5%
3490237 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.74 61.0 3.81e-01 90.8% 27.2%
3286088 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.72 52.0 4.44e-01 76.3% 52.5%
3218203 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.71 50.0 3.93e-01 73.7% 36.8%
3480240 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 58.0 4.04e-01 92.1% 36.0%
3578918 331.3.1.3 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.67 47.0 3.88e-01 89.5% 41.5%
3804281 243.1.1.45 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › S6PP_C 0.66 49.0 4.04e-01 78.9% 85.5%
3214215 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 52.0 4.55e-01 92.1% 57.0%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 56.0 5.32e-01 97.4% 80.0%
3284315 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.66 49.0 4.17e-01 80.3% 48.8%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 58.0 3.67e-01 100.0% 36.9%
3651019 5.1.4.101 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.64 55.0 3.81e-01 97.4% 47.3%
4254174 4099.1.1.22 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.64 46.0 3.76e-01 76.3% 42.8%
6391 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.64 44.0 3.86e-01 73.7% 45.5%
3818701 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 48.0 4.14e-01 80.3% 50.8%
4204257 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.64 46.0 3.81e-01 75.0% 79.7%
4002697 5090.2.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Immune inhibitor A metallopeptidase C-terminal domain › Immune inhibitor A metallopeptidase C-terminal domain 0.63 55.0 4.26e-01 96.1% 95.2%
423718 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.63 44.0 4.33e-01 72.4% 69.1%
3695948 5.1.4.56 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NUP214 0.63 55.0 3.41e-01 100.0% 41.7%
3724634 243.1.1.63 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.62 50.0 4.14e-01 90.8% 47.9%
3736331 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.43e-01 100.0% 42.4%
3489982 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 47.0 3.38e-01 82.9% 36.8%
3484133 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 45.0 3.90e-01 80.3% 66.4%
3668896 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.30e-01 100.0% 40.7%
4666593 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.60 48.0 3.83e-01 89.5% 80.5%
3741960 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.59 52.0 3.46e-01 100.0% 55.8%
4160858 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.59 50.0 4.02e-01 93.4% 81.2%
865437 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.59 51.0 4.08e-01 96.1% 77.5%
3404080 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.58 52.0 3.35e-01 100.0% 26.3%
3334916 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.58 52.0 3.42e-01 100.0% 67.0%
3681710 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 49.0 4.58e-01 96.1% 86.3%
3644862 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 3.29e-01 100.0% 53.9%
168139 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.57 44.0 2.96e-01 81.6% 70.6%
3974053 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 40.0 3.64e-01 72.4% 93.0%
4018864 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.57 39.0 2.31e-01 72.4% 13.7%
3692716 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 48.0 3.08e-01 100.0% 61.6%
3282999 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 43.0 3.18e-01 81.6% 74.5%
4082864 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 39.0 3.52e-01 72.4% 67.6%
3208973 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.56 38.0 3.41e-01 72.4% 52.6%
5024957 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.54 45.0 4.51e-01 93.4% 88.6%
3973908 881.1.1.25 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.54 43.0 3.50e-01 96.1% 43.9%
3972141 881.1.1.25 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 0.53 42.0 3.45e-01 96.1% 43.9%
3290663 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.18e-01 85.5% 65.8%
3931298 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 42.0 3.63e-01 89.5% 60.8%
2841855 265.1.1.1 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat 0.53 43.0 3.52e-01 92.1% 72.7%
3788749 6109.1.1.0 a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 0.53 44.0 3.58e-01 94.7% 54.7%
3501545 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.52 43.0 3.42e-01 94.7% 84.1%
3003909 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.52 41.0 3.29e-01 90.8% 81.4%
5049570 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 38.0 2.69e-01 76.3% 77.4%
3921594 5087.3.1.6 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht, Vit_b-sht_shell 0.52 36.0 2.23e-01 73.7% 24.2%
3959925 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 42.0 3.93e-01 94.7% 71.0%
1710492 241.1.1.2 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.52 42.0 3.46e-01 94.7% 75.8%
3173646 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 40.0 3.20e-01 89.5% 40.0%
4026900 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.50 35.0 3.10e-01 72.4% 84.3%
3282239 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.50 36.0 3.02e-01 73.7% 41.5%