←Back to structures

OP172782.1__WAX12630.1__EC99P1_00038__00038

Bact-Vir

OP172782.1__WAX12630.1__EC99P1_00038__00038

Identity

Accession:
OP172782 ↗
Kingdom:
phage

Quality

74.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_EC99P1

TaxID: 2968637

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
Domain cluster: rep: MW824409.1__QZI92319.1__PODOV025v1_p0022__00022__D44-119
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 45.0 4.92e-01 90.9% 98.4%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.18e-01 97.4% 77.2%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.58 50.0 4.25e-01 98.7% 100.0%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.80e-01 89.6% 100.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 46.0 4.94e-01 93.5% 100.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.31e-01 93.5% 82.9%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.63e-01 94.8% 92.6%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 3.72e-01 94.8% 63.9%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 41.0 3.82e-01 76.6% 98.0%
3kbhE00 2.60.40.3130 Mainly Beta › Sandwich › Immunoglobulin-like › Coronavirus S1 glycoprotein, central receptor binding domain (RBD) 0.57 39.0 3.49e-01 71.4% 90.9%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 43.0 4.39e-01 92.2% 84.0%
1yf9A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 44.0 3.61e-01 88.3% 63.3%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 4.60e-01 90.9% 98.4%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.50e-01 88.3% 100.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 35.0 3.96e-01 85.7% 84.5%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.69e-01 93.5% 98.5%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 47.0 4.63e-01 100.0% 87.2%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.56 41.0 4.13e-01 79.2% 100.0%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.04e-01 97.4% 81.6%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 4.04e-01 92.2% 92.7%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 4.19e-01 85.7% 100.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.55 46.0 3.90e-01 94.8% 77.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 42.0 4.47e-01 94.8% 97.0%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 4.31e-01 85.7% 100.0%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 4.34e-01 90.9% 100.0%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.54 44.0 3.98e-01 96.1% 74.4%
7apkF01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.63e-01 83.1% 96.6%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 3.87e-01 93.5% 81.9%
1ej6B00 3.90.1830.10 Alpha Beta › Alpha-Beta Complex › Inner capsid protein lambda-1 › Inner capsid protein lambda-1 0.51 39.0 2.19e-01 84.4% 8.0%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.50 42.0 3.74e-01 96.1% 79.3%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.50 42.0 3.81e-01 98.7% 99.1%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.50 38.0 2.65e-01 85.7% 83.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3554995 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 46.0 4.86e-01 92.2% 87.1%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 5.04e-01 88.3% 100.0%
3930456 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.58e-01 94.8% 89.2%
2890675 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 45.0 4.84e-01 92.2% 93.8%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.87e-01 94.8% 100.0%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 46.0 4.36e-01 92.2% 70.0%
3924338 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.47e-01 89.6% 82.9%
3608770 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.60 45.0 3.62e-01 94.8% 40.6%
3498145 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 45.0 4.84e-01 93.5% 96.9%
3541996 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.59 43.0 3.25e-01 92.2% 31.6%
3907870 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 44.0 4.40e-01 92.2% 77.2%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.59 42.0 4.52e-01 96.1% 90.8%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 45.0 4.31e-01 93.5% 70.3%
3899828 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.59 44.0 4.35e-01 92.2% 76.2%
3521739 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 44.0 4.26e-01 92.2% 71.8%
3626531 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 44.0 4.20e-01 94.8% 68.9%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.56e-01 93.5% 98.3%
3841524 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 46.0 4.09e-01 96.1% 60.0%
1930964 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 43.0 4.50e-01 90.9% 88.2%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.58 42.0 4.05e-01 93.5% 66.7%
3573262 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.58 44.0 4.18e-01 93.5% 68.9%
4134876 4.1.1.334 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.58 48.0 3.72e-01 97.4% 41.8%
363983 234.1.1.1 ↗ a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease 0.58 41.0 3.84e-01 79.2% 60.0%
3893368 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.57 43.0 4.67e-01 93.5% 96.9%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.57 47.0 4.23e-01 93.5% 85.5%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 44.0 4.59e-01 93.5% 91.4%
3776390 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.57 46.0 4.02e-01 94.8% 59.1%
4849658 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.56 44.0 3.76e-01 87.0% 73.5%
3556601 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.56 42.0 4.54e-01 93.5% 98.5%
3900733 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 44.0 4.57e-01 94.8% 95.7%
3215500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.23e-01 92.2% 100.0%
1290375 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 44.0 4.70e-01 87.0% 100.0%
3441677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.95e-01 93.5% 100.0%
None — 0.55 41.0 2.69e-01 81.8% 34.1%
3487936 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 4.36e-01 93.5% 90.0%
598 4.1.1.68 ↗ beta barrels › SH3 › SH3 › SH3 › YorP 0.54 42.0 4.39e-01 94.8% 93.0%
3595917 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 3.64e-01 94.8% 46.5%
4598590 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 40.0 4.18e-01 96.1% 88.6%
3613178 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.54 44.0 3.80e-01 96.1% 74.8%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 39.0 4.08e-01 96.1% 87.1%
3605590 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.53 44.0 3.97e-01 94.8% 100.0%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.53 41.0 4.19e-01 96.1% 88.0%
3254315 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 44.0 3.50e-01 94.8% 45.0%
3594081 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 4.13e-01 88.3% 95.0%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.52 40.0 4.23e-01 94.8% 98.5%
3435006 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.52 39.0 4.13e-01 93.5% 96.9%
4419198 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.52 39.0 3.99e-01 94.8% 85.3%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.52 37.0 3.96e-01 94.8% 100.0%
3323984 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.52 44.0 3.33e-01 94.8% 40.0%
3879755 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.51 45.0 4.06e-01 98.7% 77.1%
4950222 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.51 43.0 3.86e-01 96.1% 81.8%
3631669 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 40.0 2.80e-01 93.5% 35.2%
3955562 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.50 41.0 3.82e-01 94.8% 80.0%
D2 high residues 91-159
PDB
Domain cluster: representative