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OP172805.1__WAX15940.1__EH93P2_00058__00058

Bact-Vir

OP172805.1__WAX15940.1__EH93P2_00058__00058

Identity

Accession:
OP172805 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_EH93P2

TaxID: 2968653

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-81
PDB
Domain cluster: rep: CG10_big_fil_rev_8_21_14_0-10_scaffold_17_prodigal-single.1__X__X__00096__D70-143
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 39.3 5.50e-10 64.0% 91.3%
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.85 80.0 7.00e-01 100.0% 71.7%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.69 32.0 3.65e-01 84.0% 57.1%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 32.0 3.62e-01 78.7% 57.1%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 36.0 3.02e-01 81.3% 31.4%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.66 30.0 3.14e-01 76.0% 42.0%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.65 56.0 4.45e-01 100.0% 68.5%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 33.0 3.30e-01 82.7% 44.7%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 32.0 3.30e-01 82.7% 45.9%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 31.0 3.99e-01 81.3% 91.9%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.62 34.0 3.42e-01 81.3% 51.9%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 27.0 3.36e-01 81.3% 66.7%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 36.0 3.26e-01 80.0% 44.2%
4m52A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 28.0 2.39e-01 81.3% 25.6%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 35.0 3.25e-01 82.7% 48.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 28.0 2.93e-01 82.7% 50.7%
2rjqA02 3.40.1620.60 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.54 33.0 3.34e-01 97.3% 61.6%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 35.0 3.15e-01 84.0% 50.0%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 44.0 3.29e-01 94.7% 37.0%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 34.0 3.14e-01 82.7% 50.5%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.51 42.0 2.72e-01 92.0% 84.6%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 34.0 2.86e-01 81.3% 41.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.86 81.0 6.83e-01 100.0% 86.1%
3266965 378.1.2.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 0.84 69.0 7.43e-01 94.7% 100.0%
4031789 4959.1.1.0 ↗ a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit 0.72 34.0 3.82e-01 81.3% 55.0%
4949181 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.70 51.0 5.12e-01 82.7% 76.0%
3940997 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.69 32.0 2.64e-01 82.7% 23.7%
3383152 395.1.1.6 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PF27637 0.67 29.0 4.08e-01 80.0% 96.7%
89916 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.65 57.0 4.50e-01 100.0% 68.5%
8233 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.65 56.0 4.45e-01 100.0% 68.5%
4029439 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 34.0 3.59e-01 81.3% 58.0%
3965157 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.61 30.0 2.23e-01 82.7% 16.8%
4107771 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 33.0 2.85e-01 84.0% 31.7%
2755261 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 29.0 2.15e-01 82.7% 16.8%
4250120 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 32.0 2.84e-01 84.0% 33.0%
3386077 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 29.0 3.43e-01 81.3% 71.1%
3420881 5.1.3.252 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF27637 0.58 27.0 3.47e-01 81.3% 88.6%
3718370 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.57 32.0 1.98e-01 77.3% 8.2%
4014375 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.56 30.0 3.60e-01 85.3% 78.0%
3762791 913.1.1.9 ↗ few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › PF27521 0.56 27.0 3.23e-01 76.0% 68.9%
2925022 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.56 29.0 3.06e-01 77.3% 53.0%
5020098 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 29.0 2.98e-01 82.7% 50.0%
4609120 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.54 29.0 2.78e-01 84.0% 40.0%
4932562 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 31.0 2.79e-01 93.3% 35.7%
4965392 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.54 29.0 3.42e-01 80.0% 78.0%
3280978 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 28.0 2.90e-01 82.7% 48.6%
3888254 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 28.0 3.43e-01 81.3% 82.2%
3307718 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.52 43.0 3.76e-01 92.0% 83.3%
4932479 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 38.0 2.57e-01 77.3% 63.3%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.52 35.0 2.36e-01 89.3% 17.6%
4016439 4086.1.1.1 ↗ a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI 0.52 27.0 2.48e-01 82.7% 34.3%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 28.0 2.67e-01 82.7% 40.0%
3658860 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.85e-01 85.3% 31.4%
D2 high residues 93-143
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.90 78.0 7.02e-01 100.0% 70.6%
1uxdA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 44.0 4.25e-01 72.5% 81.4%
5t3eB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.61 43.0 2.75e-01 74.5% 75.4%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 52.0 5.13e-01 100.0% 100.0%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 39.0 4.44e-01 100.0% 94.6%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 48.0 5.02e-01 100.0% 100.0%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.57 43.0 4.43e-01 84.3% 93.9%
6nw1A00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 43.0 4.57e-01 98.0% 97.8%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 49.0 3.87e-01 100.0% 68.0%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 32.0 3.34e-01 96.1% 66.7%
2qnuA00 3.40.1730.10 Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain 0.52 42.0 2.87e-01 98.0% 62.1%
3krbA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.50 40.0 2.56e-01 94.1% 35.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.90 78.0 6.98e-01 100.0% 69.6%
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.86 80.0 7.88e-01 100.0% 98.1%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.79 70.0 6.26e-01 100.0% 71.0%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.78 66.0 6.72e-01 98.0% 96.0%
4994828 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.73 45.0 4.03e-01 80.4% 44.3%
3954617 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 47.0 4.59e-01 70.6% 92.7%
3987930 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.68 47.0 4.30e-01 74.5% 67.1%
3942056 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.67 46.0 4.89e-01 70.6% 100.0%
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.67 52.0 4.14e-01 88.2% 76.1%
3590852 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 47.0 3.79e-01 74.5% 60.0%
3476358 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 45.0 4.30e-01 72.5% 93.3%
3284690 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.63 45.0 3.22e-01 76.5% 36.0%
3268224 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 42.0 4.13e-01 70.6% 92.7%
4974400 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.59 48.0 3.18e-01 100.0% 42.6%
4228237 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.59 42.0 4.25e-01 74.5% 92.0%
3655335 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.59 46.0 3.21e-01 86.3% 39.4%
4277578 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.58 46.0 4.67e-01 88.2% 98.0%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.57 45.0 4.43e-01 86.3% 85.5%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.57 44.0 4.20e-01 84.3% 76.7%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.56 39.0 3.22e-01 70.6% 53.7%
3898121 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.56 45.0 4.40e-01 88.2% 85.5%
5057952 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.56 36.0 3.32e-01 100.0% 52.3%
3636424 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.55 42.0 4.16e-01 84.3% 92.7%
3947892 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 44.0 4.49e-01 92.2% 96.0%
1692508 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.54 43.0 3.89e-01 88.2% 91.5%
4967657 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.54 36.0 3.84e-01 100.0% 77.8%
4292036 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.54 44.0 4.20e-01 84.3% 91.7%
5061831 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.52 35.0 3.38e-01 100.0% 58.3%
4945555 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 34.0 3.86e-01 100.0% 100.0%
4268554 375.1.1.1 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 0.51 44.0 3.81e-01 100.0% 76.2%