Back to structures

OP172807.1__WAX16131.1__EH802P2_00025__00025

Bact-Vir

OP172807.1__WAX16131.1__EH802P2_00025__00025

Identity

Accession:
OP172807 ↗
Kingdom:
phage

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-89
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.86 59.0 6.89e-01 71.9% 100.0%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.81 63.0 6.58e-01 82.0% 98.8%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 58.0 6.19e-01 76.4% 100.0%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 63.0 4.52e-01 83.1% 47.7%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.80 54.0 5.61e-01 75.3% 73.8%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.80 64.0 6.40e-01 84.3% 84.4%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 58.0 6.50e-01 76.4% 100.0%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.79 57.0 6.46e-01 75.3% 98.5%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.79 60.0 6.38e-01 79.8% 94.8%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.79 59.0 6.08e-01 82.0% 82.4%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 62.0 5.98e-01 84.3% 78.0%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 61.0 5.24e-01 83.1% 58.3%
5fmnA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.78 63.0 6.48e-01 86.5% 89.5%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.78 54.0 6.12e-01 71.9% 100.0%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 58.0 6.29e-01 87.6% 94.5%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.78 66.0 5.95e-01 100.0% 68.4%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.77 61.0 5.08e-01 84.3% 50.3%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.77 62.0 6.26e-01 84.3% 88.5%
3a8pA02 6.10.140.680 Special › Helix non-globular › Helix Hairpins › 0.77 63.0 5.75e-01 94.4% 68.4%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 69.0 4.71e-01 100.0% 91.2%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.76 52.0 5.24e-01 94.4% 69.2%
2dnxA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 59.0 5.15e-01 87.6% 56.2%
6bl6B01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.76 67.0 4.62e-01 100.0% 40.2%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.75 52.0 5.95e-01 89.9% 100.0%
3zdqA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.74 58.0 3.90e-01 92.1% 22.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 53.0 5.70e-01 74.2% 91.9%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.74 59.0 5.79e-01 100.0% 80.0%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 46.0 4.76e-01 100.0% 67.1%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.74 60.0 5.71e-01 100.0% 75.5%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.73 53.0 5.31e-01 98.9% 74.7%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.73 66.0 5.75e-01 100.0% 77.4%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.73 57.0 6.03e-01 84.3% 100.0%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.72 45.0 5.21e-01 93.3% 90.3%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.72 60.0 4.02e-01 89.9% 52.4%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.72 58.0 6.08e-01 87.6% 100.0%
7metA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.72 64.0 4.42e-01 100.0% 92.9%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.72 56.0 5.46e-01 83.1% 99.0%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.72 56.0 5.46e-01 84.3% 88.8%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.71 55.0 5.20e-01 83.1% 95.3%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.70 53.0 5.02e-01 96.6% 67.0%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 57.0 5.55e-01 95.5% 78.8%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.70 51.0 5.67e-01 100.0% 95.8%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 49.0 5.41e-01 77.5% 97.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.69 56.0 5.39e-01 87.6% 90.2%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 50.0 5.32e-01 92.1% 88.3%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 59.0 5.54e-01 100.0% 77.1%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.69 51.0 4.92e-01 92.1% 68.6%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.69 52.0 4.23e-01 83.1% 41.7%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 52.0 5.67e-01 80.9% 100.0%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 54.0 5.30e-01 92.1% 79.8%
3lbxB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 57.0 5.35e-01 100.0% 76.6%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.66 60.0 5.19e-01 100.0% 86.9%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.64 54.0 5.40e-01 91.0% 100.0%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 43.0 4.28e-01 97.8% 67.0%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.63 57.0 5.14e-01 100.0% 86.7%
3okqA00 1.20.58.1540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain 0.62 53.0 4.71e-01 93.3% 69.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3560590 3755.3.1.142 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › FAM186A-B_C 0.88 69.0 5.67e-01 84.3% 48.7%
3393794 3922.1.1.211 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.83 69.0 5.90e-01 87.6% 77.8%
3564399 3755.3.1.282 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Tmemb_cc2 0.82 65.0 5.96e-01 84.3% 67.8%
5065057 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 64.0 5.20e-01 82.0% 94.8%
222991 192.10.1.1 alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › DksA_N 0.81 57.0 5.72e-01 74.2% 81.5%
3784740 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.80 60.0 6.43e-01 78.7% 94.7%
3962893 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.79 63.0 6.21e-01 84.3% 83.2%
3186698 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.79 59.0 6.16e-01 80.9% 87.5%
3166880 906.1.1.0 few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger 0.79 59.0 6.56e-01 85.4% 100.0%
2322486 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.78 70.0 4.82e-01 100.0% 42.2%
3548194 192.2.1.18 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING 0.77 60.0 5.58e-01 84.3% 67.3%
3917888 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.77 57.0 5.19e-01 80.9% 60.0%
4017817 3922.1.1.229 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Cep57_MT_bd 0.77 60.0 5.12e-01 84.3% 52.9%
3881288 3710.1.1.1 alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.77 59.0 5.46e-01 84.3% 65.5%
3484742 3922.1.1.197 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp 0.76 59.0 6.07e-01 84.3% 87.1%
3973453 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.76 63.0 6.62e-01 98.9% 100.0%
5064482 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 59.0 4.79e-01 83.1% 57.6%
4406698 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.76 55.0 5.42e-01 76.4% 96.8%
3593427 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 60.0 4.92e-01 84.3% 49.7%
4992337 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.75 62.0 5.34e-01 87.6% 59.3%
3735650 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.75 63.0 6.43e-01 93.3% 95.3%
4384750 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.75 57.0 5.60e-01 80.9% 95.8%
3520009 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 57.0 6.01e-01 83.1% 100.0%
3940087 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.73 53.0 5.58e-01 76.4% 100.0%
3899873 632.8.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C 0.72 56.0 5.23e-01 92.1% 66.4%
3635408 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 64.0 5.53e-01 100.0% 87.1%
4225217 3710.1.1.1 alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 0.72 57.0 5.29e-01 84.3% 70.9%
3812957 606.1.1.13 alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › DUF3475 0.72 56.0 4.09e-01 83.1% 80.9%
3507551 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.71 57.0 5.62e-01 87.6% 82.1%
4338795 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.71 55.0 4.46e-01 83.1% 44.1%
4784164 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.71 52.0 5.68e-01 93.3% 98.6%
3215342 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.70 54.0 5.30e-01 84.3% 76.8%
3487862 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.70 53.0 3.88e-01 80.9% 33.3%
4928539 4323.1.1.0 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C 0.69 52.0 4.61e-01 80.9% 71.1%
3638319 192.7.1.56 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › CHD5 0.68 53.0 5.17e-01 83.1% 80.0%
3273862 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 58.0 5.71e-01 93.3% 90.5%
4106385 3291.1.1.89 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CHD5 0.68 52.0 5.04e-01 83.1% 80.0%
3527434 6006.1.1.6 extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF27661 0.68 61.0 5.08e-01 100.0% 60.0%
329329 3814.1.1.1 alpha bundles › Uncharacterized protein GSU0061 › Uncharacterized protein GSU0061 › Uncharacterized protein GSU0061 › DUF3232 0.67 59.0 5.19e-01 100.0% 80.7%
4683070 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 52.0 4.47e-01 83.1% 53.6%
4942736 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.67 59.0 5.64e-01 100.0% 84.8%
4998774 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.65 56.0 3.51e-01 95.5% 36.8%
4936792 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 57.0 4.51e-01 100.0% 100.0%