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OP172807.1__WAX16177.1__EH802P2_00072__00071

Bact-Vir

OP172807.1__WAX16177.1__EH802P2_00072__00071

Identity

Accession:
OP172807 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_EH802P2

TaxID: 2968651

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: rep: OP756059.1__UZO33122.1__CBSLWZGG_CDS168__00169__D10-71
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07463.17 best NUMOD4 31.4 2.50e-07 98.3% 69.4%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.83 76.0 6.20e-01 100.0% 57.5%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.66 37.0 4.37e-01 85.0% 84.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 46.0 4.50e-01 76.7% 94.0%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 39.0 3.84e-01 93.3% 56.7%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.60 43.0 3.71e-01 75.0% 70.5%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 35.0 3.90e-01 86.7% 75.6%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.09e-01 73.3% 93.5%
3rlfF02 3.10.650.10 Alpha Beta › Roll › MalF N-terminal region-like › MalF N-terminal region-like 0.58 44.0 3.99e-01 81.7% 68.3%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 36.0 3.59e-01 95.0% 60.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 33.0 3.36e-01 91.7% 55.7%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.55 45.0 2.92e-01 100.0% 57.2%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.05e-01 100.0% 81.4%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.32e-01 98.3% 84.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.97e-01 76.7% 96.5%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.54 34.0 3.59e-01 85.0% 74.5%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.22e-01 98.3% 96.2%
1tgjA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 42.0 3.43e-01 88.3% 75.9%
5b1rA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.52 40.0 3.29e-01 83.3% 75.0%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.79e-01 78.3% 93.3%
3fhlA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 44.0 3.23e-01 100.0% 79.9%
5ksoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.80e-01 78.3% 59.6%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.26e-01 78.3% 96.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227986 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 44.0 4.02e-01 93.3% 48.8%
5035671 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.68 42.0 3.54e-01 93.3% 36.2%
5016920 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.67 42.0 3.86e-01 91.7% 48.7%
5072315 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.66 41.0 3.31e-01 93.3% 30.9%
4953898 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 41.0 3.26e-01 93.3% 30.4%
5020098 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 40.0 3.81e-01 93.3% 54.3%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.63 45.0 4.50e-01 75.0% 96.7%
415 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 39.0 3.84e-01 93.3% 56.7%
4514268 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 41.0 3.63e-01 93.3% 44.9%
4995318 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 38.0 3.12e-01 91.7% 31.1%
3965386 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.62 38.0 3.14e-01 91.7% 31.4%
4930470 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 40.0 3.57e-01 91.7% 45.9%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.60 43.0 3.69e-01 76.7% 65.0%
3280978 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 37.0 3.61e-01 91.7% 52.9%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.12e-01 78.3% 89.3%
3471097 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.60 40.0 3.38e-01 100.0% 39.1%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.60 38.0 3.49e-01 93.3% 47.5%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.59 44.0 3.71e-01 78.3% 67.0%
4468497 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.59 49.0 4.17e-01 96.7% 90.5%
4106359 207.1.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.58 42.0 2.86e-01 85.0% 21.4%
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 36.0 3.03e-01 93.3% 32.2%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.72e-01 75.0% 75.0%
3994977 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 40.0 2.51e-01 73.3% 15.8%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.57 40.0 4.19e-01 75.0% 100.0%
3257822 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.57 41.0 2.68e-01 78.3% 40.3%
3211606 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.78e-01 81.7% 92.9%
5077254 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.56 39.0 2.38e-01 76.7% 44.3%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.56 39.0 3.23e-01 75.0% 50.4%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.55 40.0 4.13e-01 78.3% 98.2%
5079728 208.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.54 37.0 2.66e-01 93.3% 22.6%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.40e-01 100.0% 93.2%
3528425 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 41.0 3.41e-01 86.7% 89.6%
3684918 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.53 38.0 3.74e-01 93.3% 70.8%
3875074 7502.1.1.7 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.53 43.0 3.63e-01 95.0% 82.7%
5022491 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.53 46.0 4.15e-01 100.0% 80.0%
3758538 216.1.1.27 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › HGTP_anticodon2 0.52 43.0 3.57e-01 96.7% 79.1%
4559371 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.20e-01 100.0% 87.3%
3499649 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.51 43.0 3.89e-01 100.0% 86.7%
3476221 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.51 43.0 2.58e-01 100.0% 16.1%
4250402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.84e-01 83.3% 97.8%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 44.0 4.22e-01 100.0% 92.9%
5025448 1075.1.1.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.51 45.0 2.91e-01 100.0% 68.9%
5024985 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.51 32.0 3.13e-01 95.0% 54.3%
3680499 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.50 42.0 2.37e-01 100.0% 23.7%
D2 high residues 76-121
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 72.0 6.39e-01 100.0% 70.6%
3futA02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.65 47.0 4.28e-01 76.1% 98.5%
1zr6A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 42.0 3.07e-01 100.0% 26.2%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.58 46.0 3.26e-01 91.3% 82.3%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 48.0 4.68e-01 100.0% 98.1%
5ce8A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.58 45.0 3.43e-01 91.3% 93.5%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.58 47.0 3.58e-01 100.0% 86.7%
3wajA03 1.20.58.1650 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 35.0 2.79e-01 100.0% 28.0%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.53 43.0 2.80e-01 95.7% 96.6%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.53 45.0 3.63e-01 100.0% 64.9%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.51 41.0 3.57e-01 100.0% 63.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.83 72.0 6.36e-01 100.0% 69.6%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.76 64.0 6.31e-01 100.0% 94.0%
4052768 3675.1.1.0 ↗ a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.60 41.0 2.94e-01 71.7% 56.0%
365968 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.58 46.0 3.19e-01 91.3% 77.1%
4890621 390.1.1.2 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › WSC 0.51 44.0 3.54e-01 100.0% 54.3%