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OP172811.1__WAX16504.1__LC76P1_00067__00067
Bact-VirOP172811.1__WAX16504.1__LC76P1_00067__00067
Identity
- Accession:
- OP172811 ↗
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
View cluster (83 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-50_121-214_297-360
Domain cluster:
rep: IMGVR_UViG_3300022868_000032-3300022868-Ga0222697_100008422__D4-28_121-240
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8d3mI01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.70 | 61.0 | 6.05e-01 | 90.1% | 95.2% |
| 5zyuA01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.64 | 47.0 | 4.75e-01 | 74.8% | 100.0% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.63 | 51.0 | 5.00e-01 | 84.7% | 96.8% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.62 | 58.0 | 5.23e-01 | 99.0% | 98.1% |
| 4k3bA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.55 | 18.0 | 2.67e-01 | 80.2% | 60.9% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4969306 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.77 | 67.0 | 6.01e-01 | 90.1% | 90.2% |
| 4932093 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.76 | 67.0 | 6.08e-01 | 91.6% | 100.0% |
| 4927000 | 2008.1.1.217 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase | 0.75 | 65.0 | 3.94e-01 | 89.6% | 22.3% |
| 3839909 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.72 | 63.0 | 5.71e-01 | 90.1% | 98.1% |
| 4958436 | 2008.1.1.217 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase | 0.71 | 65.0 | 3.99e-01 | 96.0% | 92.8% |
| 5005260 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.71 | 62.0 | 5.59e-01 | 90.6% | 90.8% |
| 4028354 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.66 | 60.0 | 5.31e-01 | 94.6% | 99.3% |
| 3743286 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.66 | 59.0 | 5.08e-01 | 93.1% | 99.0% |
| 4022097 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.66 | 60.0 | 5.31e-01 | 95.0% | 95.3% |
| 5066100 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.66 | 61.0 | 5.74e-01 | 97.0% | 97.4% |
| 4990214 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 47.0 | 4.84e-01 | 73.8% | 100.0% |
| 3734211 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.64 | 58.0 | 4.91e-01 | 95.0% | 94.7% |
| 5012863 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.64 | 55.0 | 5.59e-01 | 88.6% | 100.0% |
| 4501322 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 45.0 | 4.33e-01 | 72.3% | 100.0% |
| None | — | 0.63 | 57.0 | 5.13e-01 | 95.0% | 94.3% | |
| 5029815 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.61 | 53.0 | 5.17e-01 | 90.6% | 100.0% |
| 5063119 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.59 | 51.0 | 4.91e-01 | 91.6% | 97.8% |
| 4074416 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.56 | 48.0 | 4.19e-01 | 92.1% | 86.8% |
| 3170904 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.56 | 22.0 | 3.59e-01 | 77.2% | 98.7% |
D2
medium
residues 237-292
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.79 | 61.0 | 5.18e-01 | 82.1% | 61.8% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.71 | 56.0 | 5.24e-01 | 87.5% | 84.5% |
| 2y51A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.71 | 60.0 | 3.79e-01 | 98.2% | 43.5% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.70 | 55.0 | 5.11e-01 | 87.5% | 84.7% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.69 | 49.0 | 4.57e-01 | 75.0% | 60.0% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 48.0 | 4.27e-01 | 78.6% | 78.2% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 50.0 | 4.53e-01 | 83.9% | 84.0% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.66 | 55.0 | 4.85e-01 | 94.6% | 90.7% |
| 6m36O01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.66 | 57.0 | 4.84e-01 | 100.0% | 68.8% |
| 1r1dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.65 | 49.0 | 3.14e-01 | 98.2% | 17.8% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.64 | 53.0 | 4.62e-01 | 100.0% | 82.1% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.64 | 45.0 | 4.53e-01 | 89.3% | 75.0% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.63 | 46.0 | 4.18e-01 | 80.4% | 80.2% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.63 | 49.0 | 4.72e-01 | 89.3% | 100.0% |
| 2g80A02 | 1.10.720.60 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.63 | 52.0 | 4.79e-01 | 98.2% | 92.3% |
| 4c0zA02 | 1.10.150.480 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.63 | 53.0 | 4.53e-01 | 98.2% | 86.5% |
| 5oklA01 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 48.0 | 4.15e-01 | 92.9% | 96.0% |
| 3qybA02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.61 | 44.0 | 3.80e-01 | 78.6% | 63.4% |
| 3w1eA01 | 3.30.1660.40 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › FlgT, N-terminal domain | 0.57 | 46.0 | 4.15e-01 | 100.0% | 71.1% |
| 1usyC00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.56 | 45.0 | 3.01e-01 | 100.0% | 32.5% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.55 | 46.0 | 3.55e-01 | 92.9% | 58.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3277930 | 632.2.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 | 0.76 | 56.0 | 5.90e-01 | 80.4% | 100.0% |
| 3970703 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.75 | 55.0 | 5.08e-01 | 80.4% | 80.0% |
| 4057034 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.75 | 55.0 | 4.94e-01 | 76.8% | 86.7% |
| 3309617 | 103.1.1.56 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_DHX29 | 0.73 | 52.0 | 5.47e-01 | 75.0% | 80.0% |
| 4284927 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.73 | 55.0 | 5.45e-01 | 80.4% | 91.4% |
| 3288394 | 632.2.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 | 0.73 | 59.0 | 5.94e-01 | 89.3% | 96.4% |
| 4927047 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.72 | 54.0 | 5.00e-01 | 83.9% | 94.7% |
| 3676971 | 143.1.1.3 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › MLLE_2 | 0.72 | 52.0 | 4.95e-01 | 94.6% | 66.2% |
| 3587779 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.72 | 58.0 | 5.14e-01 | 89.3% | 78.8% |
| 3858695 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 54.0 | 4.75e-01 | 83.9% | 91.8% |
| 4342279 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.71 | 53.0 | 5.26e-01 | 82.1% | 81.7% |
| 3286824 | 632.2.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 | 0.70 | 52.0 | 5.61e-01 | 78.6% | 100.0% |
| 3793635 | 632.13.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like | 0.70 | 56.0 | 5.85e-01 | 91.1% | 100.0% |
| 4298932 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.70 | 54.0 | 5.29e-01 | 83.9% | 86.7% |
| 3952457 | 632.2.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 | 0.70 | 56.0 | 5.70e-01 | 89.3% | 96.4% |
| 3406034 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.70 | 56.0 | 4.66e-01 | 89.3% | 80.0% |
| 4013369 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 55.0 | 5.04e-01 | 87.5% | 73.3% |
| 3961272 | 632.3.1.9 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1707 | 0.69 | 51.0 | 5.57e-01 | 80.4% | 100.0% |
| 3955218 | 632.2.1.17 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1707 | 0.69 | 51.0 | 5.52e-01 | 80.4% | 100.0% |
| 3987263 | 4321.1.1.3 ↗ | a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › PgdA_N | 0.68 | 59.0 | 4.00e-01 | 100.0% | 37.3% |
| 4223484 | 225.1.1.6 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_2 | 0.67 | 59.0 | 4.36e-01 | 100.0% | 49.3% |
| 4985470 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.64 | 50.0 | 4.78e-01 | 91.1% | 98.6% |
| 3274698 | 316.1.1.56 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 | 0.64 | 43.0 | 2.82e-01 | 71.4% | 15.8% |
| 4637603 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.63 | 53.0 | 3.92e-01 | 100.0% | 96.9% |
| 3197246 | 3721.1.1.0 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain | 0.62 | 53.0 | 4.95e-01 | 98.2% | 80.0% |
| 3441234 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.61 | 43.0 | 3.98e-01 | 94.6% | 57.5% |
| 4938700 | 101.1.2.940 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26383 | 0.60 | 48.0 | 3.36e-01 | 96.4% | 50.5% |
| 4163666 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 43.0 | 2.75e-01 | 83.9% | 27.6% |
| 3643105 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.58 | 53.0 | 3.82e-01 | 100.0% | 39.4% |
| None | — | 0.54 | 44.0 | 2.81e-01 | 98.2% | 54.0% | |
| 4303968 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.52 | 44.0 | 2.86e-01 | 100.0% | 30.9% |
| 3685745 | 611.7.1.0 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain | 0.50 | 37.0 | 3.17e-01 | 87.5% | 87.3% |