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OP172811.1__WAX16566.1__LC76P1_00129__00129
Bact-VirOP172811.1__WAX16566.1__LC76P1_00129__00129
Identity
- Accession:
- OP172811 ↗
- Kingdom:
- phage
Quality
72.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 192-203_365-413
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4damC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 43.0 | 3.68e-01 | 82.0% | 75.0% |
| 5u89A01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.52 | 40.0 | 3.45e-01 | 82.0% | 66.3% |
| 6p8iA04 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.51 | 35.0 | 2.98e-01 | 83.6% | 43.3% |
| 4g1iA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 40.0 | 3.84e-01 | 85.2% | 87.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964458 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 48.0 | 4.27e-01 | 82.0% | 68.9% |
| 4045587 | 2.1.1.79 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecG_wedge | 0.60 | 45.0 | 3.91e-01 | 82.0% | 65.3% |
| 4616273 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 37.0 | 4.21e-01 | 70.5% | 100.0% |
| 4125383 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.53 | 40.0 | 3.32e-01 | 82.0% | 59.1% |
| 3034704 | 2004.1.1.84 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TsaE | 0.52 | 35.0 | 2.70e-01 | 70.5% | 66.1% |
| 4980308 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.52 | 40.0 | 3.43e-01 | 85.2% | 68.0% |
| 185290 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.51 | 39.0 | 3.76e-01 | 82.0% | 86.8% |
| 3954954 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.50 | 38.0 | 3.23e-01 | 83.6% | 65.7% |
D2
high
residues 205-363
Domain cluster:
rep: MW805362.1__URC15391.1__JLT2_23__00023__D2-125
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00754.32 best | F5_F8_type_C | 55.1 | 1.20e-14 | 80.5% | 86.6% |
| PF22633.4 | F5_F8_type_C_2 | 41.6 | 2.20e-10 | 62.3% | 91.1% |
D3
medium
residues 1-189