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OP172811.1__WAX16627.1__LC76P1_00190__00190

Bact-Vir

OP172811.1__WAX16627.1__LC76P1_00190__00190

Identity

Accession:
OP172811 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-40
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.73 43.0 3.43e-01 100.0% 28.9%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.70 39.0 4.08e-01 94.7% 55.6%
2g7cB01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.68 50.0 4.19e-01 84.2% 47.0%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 47.0 2.74e-01 76.3% 8.9%
2a90A02 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 45.0 3.90e-01 100.0% 44.3%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 54.0 3.69e-01 100.0% 48.3%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 52.0 3.44e-01 100.0% 47.5%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.63 49.0 3.49e-01 92.1% 39.1%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.63 44.0 4.42e-01 78.9% 74.4%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.62 49.0 4.10e-01 97.4% 49.4%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 49.0 3.39e-01 97.4% 32.5%
1tmoA03 3.90.55.10 Alpha Beta › Alpha-Beta Complex › Dimethylsulfoxide Reductase; domain 3 › Dimethylsulfoxide Reductase, domain 3 0.62 41.0 3.29e-01 73.7% 30.2%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.62 53.0 4.70e-01 100.0% 80.7%
2pjdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 43.0 2.79e-01 76.3% 46.9%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 3.81e-01 92.1% 82.5%
1sbxA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.61 45.0 3.44e-01 86.8% 61.3%
3nuwA02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.61 45.0 2.83e-01 81.6% 32.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.14e-01 100.0% 64.6%
5nr1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 43.0 3.37e-01 89.5% 74.5%
2r8rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 51.0 3.19e-01 100.0% 92.8%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.59 49.0 4.06e-01 100.0% 91.9%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 3.85e-01 100.0% 73.1%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.58 45.0 3.36e-01 92.1% 31.0%
4p16A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.57 41.0 2.92e-01 81.6% 25.2%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.56 42.0 2.72e-01 92.1% 50.4%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 38.0 2.57e-01 86.8% 98.7%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 42.0 3.58e-01 89.5% 59.7%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.56 41.0 3.16e-01 84.2% 93.1%
2bn8A00 3.30.730.20 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › Cell division activator CedA 0.55 41.0 3.49e-01 84.2% 80.6%
7tjbA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 48.0 3.00e-01 100.0% 92.7%
4fe9A01 2.60.40.3640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.19e-01 94.7% 61.7%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.55 41.0 2.95e-01 94.7% 27.9%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 38.0 3.59e-01 81.6% 56.4%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.26e-01 84.2% 43.7%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.21e-01 100.0% 56.8%
5ddtA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 43.0 2.65e-01 89.5% 28.4%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 2.64e-01 92.1% 18.6%
4mptA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 44.0 2.94e-01 92.1% 62.6%
2v3uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 46.0 3.12e-01 100.0% 32.0%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.28e-01 89.5% 87.8%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 40.0 3.55e-01 89.5% 80.6%
3o8eD02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 29.0 2.55e-01 71.1% 26.7%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.52 46.0 3.02e-01 100.0% 72.6%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.52 40.0 3.03e-01 100.0% 41.0%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 3.43e-01 100.0% 48.3%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.22e-01 100.0% 67.3%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.51 39.0 3.20e-01 89.5% 78.2%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 38.0 2.94e-01 97.4% 41.9%
4i62A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 44.0 3.00e-01 100.0% 35.4%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 44.0 2.77e-01 100.0% 95.6%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.51 43.0 2.81e-01 97.4% 56.8%
3fhlA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 43.0 2.77e-01 97.4% 93.5%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 43.0 3.07e-01 100.0% 36.1%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252862 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.85 58.0 4.06e-01 71.1% 51.8%
4989647 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.71 54.0 4.91e-01 97.4% 60.0%
3743864 109.4.1.1787 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N-subdom_III 0.70 55.0 2.92e-01 100.0% 12.8%
5030079 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.69 49.0 2.72e-01 78.9% 5.7%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.67 49.0 3.46e-01 78.9% 32.5%
3509753 573.1.1.0 alpha duplicates or obligate multimers › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a › Soluble domain of poliovirus core protein 3a 0.66 41.0 4.07e-01 97.4% 53.8%
3582172 922.1.1.7 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.66 47.0 3.45e-01 84.2% 39.2%
4984442 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.66 53.0 3.47e-01 97.4% 22.2%
3529465 101.1.9.4 alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno 0.66 50.0 3.70e-01 84.2% 62.9%
3365759 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 46.0 4.56e-01 81.6% 72.5%
3566388 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 45.0 4.40e-01 78.9% 67.4%
3240522 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.64 50.0 3.14e-01 84.2% 24.0%
4026392 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 39.0 3.32e-01 94.7% 38.3%
3516620 101.1.9.107 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF25867 0.63 45.0 3.47e-01 78.9% 78.9%
3869223 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 44.0 3.56e-01 78.9% 36.3%
3603208 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.63 45.0 3.65e-01 78.9% 41.4%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 48.0 4.28e-01 100.0% 56.9%
3625628 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.63 47.0 3.87e-01 84.2% 69.3%
4990102 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 42.0 4.11e-01 81.6% 62.2%
5077254 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.62 51.0 2.91e-01 100.0% 8.2%
5079015 2484.1.1.71 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RACo_C_ter 0.61 52.0 3.21e-01 100.0% 27.8%
3405538 219.1.1.111 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.60 49.0 2.96e-01 97.4% 21.7%
3225702 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 42.0 4.23e-01 76.3% 72.5%
3861324 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 41.0 3.86e-01 81.6% 56.0%
4282578 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 42.0 3.43e-01 78.9% 38.7%
3839291 300.1.1.8 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 0.59 43.0 2.70e-01 86.8% 13.2%
3571636 206.1.3.35 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF5565 0.59 44.0 2.84e-01 94.7% 76.1%
3312712 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 43.0 4.02e-01 81.6% 68.0%
5035858 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 3.15e-01 92.1% 48.1%
3798287 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.58 45.0 3.49e-01 89.5% 76.8%
3331838 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.57 42.0 3.95e-01 84.2% 64.0%
3385112 4309.1.1.0 a+b complex topology › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases 0.57 40.0 2.80e-01 71.1% 63.2%
3928803 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.57 46.0 2.96e-01 92.1% 43.0%
3400449 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 2.93e-01 94.7% 71.4%
3493703 386.1.1.20 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.56 41.0 3.97e-01 81.6% 68.9%
3620992 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.56 40.0 3.82e-01 81.6% 64.0%
154312 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.56 44.0 3.83e-01 100.0% 55.7%
4118552 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 40.0 3.49e-01 92.1% 45.3%
3577264 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 43.0 3.08e-01 100.0% 68.0%
3958090 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 43.0 2.99e-01 86.8% 73.8%
3437709 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 39.0 3.72e-01 81.6% 66.0%
3099741 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.55 44.0 3.35e-01 94.7% 72.7%
3939023 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.55 43.0 3.28e-01 86.8% 44.4%
3949260 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.55 46.0 3.39e-01 100.0% 83.6%
4457507 60.1.2.2 beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.55 40.0 2.59e-01 100.0% 48.8%
4665972 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 43.0 2.52e-01 92.1% 98.9%
3936047 3153.1.1.0 a+b two layers › PipX › PipX › PipX 0.54 41.0 3.71e-01 100.0% 58.3%
3222502 922.1.1.7 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.54 40.0 3.69e-01 92.1% 81.7%
3926138 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.54 38.0 3.02e-01 78.9% 68.9%
3882796 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.53 46.0 3.56e-01 100.0% 51.8%
3941210 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 41.0 3.08e-01 86.8% 44.2%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.53 40.0 3.29e-01 94.7% 47.1%
None 0.53 45.0 2.70e-01 100.0% 77.5%
3658440 386.1.1.26 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.53 38.0 3.46e-01 81.6% 72.7%
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 40.0 3.30e-01 92.1% 53.3%
3706809 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 44.0 2.91e-01 100.0% 40.0%
3712065 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 45.0 3.74e-01 100.0% 70.8%