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OP172815.1__WAX16831.1__PD491P1_00004__00004

Bact-Vir

OP172815.1__WAX16831.1__PD491P1_00004__00004

Identity

Accession:
OP172815 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-87
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.70 52.0 5.34e-01 92.3% 82.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.94e-01 98.7% 84.1%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.50e-01 94.9% 72.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.64e-01 97.4% 81.5%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.65 52.0 4.12e-01 89.7% 91.1%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.64 49.0 4.77e-01 83.3% 100.0%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 50.0 4.82e-01 88.5% 100.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 36.0 3.79e-01 92.3% 63.2%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 40.0 3.86e-01 80.8% 57.1%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 48.0 3.84e-01 87.2% 45.1%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.60 51.0 4.10e-01 94.9% 60.5%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 47.0 3.78e-01 87.2% 44.8%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 52.0 4.21e-01 97.4% 96.7%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.59 47.0 3.49e-01 89.7% 39.8%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.59 42.0 4.49e-01 89.7% 92.3%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 3.64e-01 71.8% 54.6%
2eo0B00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 45.0 3.93e-01 92.3% 53.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.59e-01 80.8% 87.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 39.0 4.04e-01 100.0% 73.3%
2g5dA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.58 45.0 3.84e-01 85.9% 100.0%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 45.0 3.65e-01 88.5% 45.2%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 38.0 3.94e-01 73.1% 72.9%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 37.0 3.08e-01 71.8% 34.2%
3hryA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.57 33.0 3.89e-01 83.3% 89.8%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 46.0 4.18e-01 100.0% 65.4%
1shuX00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.57 45.0 3.43e-01 100.0% 37.0%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.56 44.0 4.05e-01 100.0% 65.1%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.62e-01 83.3% 56.1%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 46.0 3.05e-01 94.9% 91.7%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 3.53e-01 93.6% 52.1%
2g6gA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.53 41.0 3.16e-01 87.2% 100.0%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.52 44.0 3.81e-01 100.0% 68.9%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 42.0 3.51e-01 93.6% 58.3%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 3.12e-01 89.7% 64.7%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.52 39.0 3.49e-01 84.6% 98.3%
5ha4A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 42.0 3.58e-01 93.6% 64.7%
3vueA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 41.0 2.87e-01 89.7% 29.6%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 46.0 3.08e-01 100.0% 33.7%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.51 38.0 3.17e-01 94.9% 42.4%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.51 41.0 2.82e-01 94.9% 48.2%
3njfA00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.51 43.0 3.89e-01 100.0% 95.5%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.50 43.0 3.96e-01 98.7% 72.9%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.50 36.0 3.48e-01 82.1% 65.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1779210 2.1.1.112 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNApolII_N 0.76 36.0 4.71e-01 92.3% 83.3%
4446654 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 36.0 3.85e-01 93.6% 51.4%
4977206 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 41.0 4.62e-01 73.1% 78.3%
4051081 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.68 42.0 4.68e-01 73.1% 80.0%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.64e-01 74.4% 65.6%
5053224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 45.0 5.01e-01 71.8% 88.3%
4953347 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.66 37.0 4.44e-01 92.3% 86.0%
5026622 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.65 45.0 4.26e-01 84.6% 60.0%
1879702 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.65 52.0 4.92e-01 88.5% 96.8%
4931072 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 45.0 4.73e-01 97.4% 81.4%
3253514 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 51.0 4.78e-01 88.5% 97.0%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.64 45.0 4.52e-01 97.4% 71.2%
5049449 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 40.0 4.72e-01 100.0% 98.0%
4942807 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.64 40.0 4.50e-01 98.7% 83.1%
3960657 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 33.0 3.45e-01 91.0% 50.7%
4285300 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.64 51.0 4.86e-01 88.5% 98.9%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.78e-01 74.4% 86.2%
5048373 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.63 42.0 3.82e-01 71.8% 50.5%
4231034 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 50.0 4.65e-01 88.5% 94.0%
3405581 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.63 46.0 3.67e-01 94.9% 37.6%
1108022 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 48.0 4.63e-01 83.3% 97.7%
4668753 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.62 49.0 4.61e-01 88.5% 96.0%
4645759 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.62 50.0 3.79e-01 91.0% 40.0%
3716939 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.61 34.0 3.50e-01 87.2% 56.0%
3167531 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 47.0 3.96e-01 83.3% 54.1%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.61 42.0 4.26e-01 73.1% 73.8%
3519226 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 34.0 4.08e-01 76.9% 86.0%
3966821 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.61 41.0 4.51e-01 89.7% 90.0%
3989371 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.60 45.0 4.81e-01 87.2% 95.4%
4129323 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.60 47.0 4.47e-01 87.2% 98.9%
3786396 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 47.0 3.94e-01 83.3% 52.3%
5073192 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 42.0 4.58e-01 83.3% 89.2%
3584109 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 3.39e-01 71.8% 68.8%
4998774 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 46.0 2.89e-01 85.9% 45.7%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.59 43.0 4.11e-01 76.9% 72.2%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.59 48.0 4.54e-01 98.7% 73.7%
3483489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.19e-01 96.2% 77.3%
1112010 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 39.0 4.04e-01 100.0% 73.3%
1557343 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.58 38.0 3.94e-01 73.1% 72.9%
3934278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.33e-01 94.9% 66.1%
4997059 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.58 41.0 4.24e-01 96.2% 81.3%
1392754 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.57 37.0 3.57e-01 71.8% 54.7%
3513418 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.57 33.0 4.01e-01 78.2% 95.6%
4060846 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.83e-01 100.0% 92.6%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.56 39.0 3.43e-01 71.8% 48.7%
3977248 5084.5.2.6 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › YhdP 0.56 48.0 3.37e-01 100.0% 30.3%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.56 36.0 4.10e-01 97.4% 92.7%
3451173 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 3.99e-01 82.1% 72.2%
3977422 246.1.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.54 43.0 3.19e-01 89.7% 33.0%
3650798 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 47.0 4.11e-01 97.4% 73.0%
5025112 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.53 42.0 3.61e-01 94.9% 53.6%
4030120 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 2.59e-01 100.0% 13.6%
3297271 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 38.0 2.54e-01 96.2% 20.0%
4938551 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.53 43.0 4.19e-01 94.9% 93.3%
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.51 42.0 3.86e-01 91.0% 100.0%
3509362 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.51 40.0 3.83e-01 100.0% 71.3%
4000896 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 43.0 2.92e-01 98.7% 25.8%