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OP172815.1__WAX16852.1__PD491P1_00025__00025

Bact-Vir

OP172815.1__WAX16852.1__PD491P1_00025__00025

Identity

Accession:
OP172815 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-67
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gksB01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.81 72.0 5.52e-01 100.0% 90.8%
3iuwA00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.80 72.0 6.64e-01 98.4% 93.7%
3cr8A01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.79 71.0 5.43e-01 100.0% 73.0%
1t62B00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.79 72.0 5.22e-01 100.0% 76.1%
3s9xA00 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.77 69.0 5.09e-01 100.0% 79.2%
3m6wA03 2.30.130.60 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.74 62.0 6.07e-01 100.0% 86.6%
2dp9A01 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.73 65.0 5.59e-01 100.0% 92.0%
2b78A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.73 63.0 6.29e-01 100.0% 93.9%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.72 64.0 5.62e-01 96.8% 87.8%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 59.0 5.60e-01 98.4% 77.3%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.69 62.0 5.38e-01 100.0% 94.7%
3vseA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.68 58.0 5.73e-01 100.0% 92.8%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.68 58.0 4.13e-01 96.8% 54.6%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 59.0 5.49e-01 100.0% 78.5%
2apoA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.67 57.0 5.01e-01 100.0% 72.7%
2as0A01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.66 57.0 5.53e-01 100.0% 92.9%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 56.0 4.10e-01 100.0% 63.9%
3c0kA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.65 55.0 5.38e-01 100.0% 91.5%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 56.0 4.69e-01 100.0% 77.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 45.0 3.49e-01 76.2% 63.9%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 44.0 3.82e-01 77.8% 94.4%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 46.0 3.67e-01 82.5% 80.6%
4hh3A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.63e-01 76.2% 87.7%
1tw0A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 44.0 3.29e-01 76.2% 52.9%
2p13A00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 49.0 4.47e-01 88.9% 76.5%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.61 49.0 4.05e-01 93.7% 76.0%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 42.0 3.50e-01 74.6% 95.8%
2o3gA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 49.0 4.61e-01 88.9% 86.8%
1g2bA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 41.0 4.21e-01 73.0% 100.0%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 43.0 3.63e-01 77.8% 87.4%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 42.0 3.64e-01 77.8% 91.7%
3laeA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 47.0 4.37e-01 88.9% 77.8%
4ew7A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 41.0 3.49e-01 76.2% 84.1%
7x7zA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.58 43.0 3.36e-01 79.4% 95.7%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 40.0 3.47e-01 74.6% 100.0%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.58 40.0 2.74e-01 73.0% 37.3%
1f98A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.37e-01 77.8% 80.8%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.44e-01 79.4% 82.9%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 3.24e-01 96.8% 35.5%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 40.0 3.38e-01 76.2% 81.9%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.68e-01 82.5% 92.9%
3cnwA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 40.0 3.13e-01 77.8% 53.2%
3p51A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 44.0 3.39e-01 100.0% 37.9%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 39.0 3.29e-01 76.2% 81.9%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 39.0 3.42e-01 76.2% 66.7%
3pu2B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 2.95e-01 74.6% 71.9%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.22e-01 96.8% 38.1%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.04e-01 77.8% 52.7%
3ewkA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 42.0 3.63e-01 88.9% 84.5%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 38.0 2.98e-01 79.4% 56.5%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.46e-01 85.7% 78.1%
2gx5C00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 36.0 2.83e-01 76.2% 65.2%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.10e-01 77.8% 76.3%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.10e-01 95.2% 65.7%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 44.0 3.30e-01 96.8% 44.2%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 2.85e-01 74.6% 73.1%
3pquA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.50 39.0 2.93e-01 88.9% 78.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4054728 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.82 67.0 6.85e-01 100.0% 93.3%
4589682 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.80 72.0 5.33e-01 100.0% 82.5%
4557607 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.80 65.0 6.48e-01 100.0% 86.2%
4180783 1.1.9.14 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 0.80 72.0 6.37e-01 100.0% 87.8%
3965169 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.80 65.0 6.69e-01 100.0% 95.0%
4141829 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.79 61.0 6.25e-01 100.0% 86.7%
4103393 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.79 63.0 6.43e-01 100.0% 90.0%
1233677 1.1.9.16 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_2 0.79 71.0 5.43e-01 100.0% 73.0%
4671607 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.79 64.0 6.52e-01 100.0% 91.7%
4972120 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.79 71.0 5.87e-01 100.0% 92.7%
5078686 1.1.9.15 beta barrels › cradle loop barrel › RIFT-related › PUA domain › Methyltranf_PUA 0.79 62.0 6.22e-01 100.0% 83.1%
4330204 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 66.0 6.60e-01 100.0% 90.8%
4087191 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.78 66.0 6.60e-01 100.0% 90.8%
4105843 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.78 61.0 6.43e-01 100.0% 98.2%
4219020 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.78 62.0 6.38e-01 100.0% 91.7%
None 0.77 59.0 3.65e-01 87.3% 15.0%
4645128 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.77 60.0 6.15e-01 100.0% 90.0%
5022429 1.1.9.35 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 0.77 69.0 5.46e-01 100.0% 82.4%
4396079 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 63.0 6.42e-01 100.0% 93.3%
4928024 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 68.0 5.34e-01 100.0% 65.6%
4149342 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 67.0 6.50e-01 100.0% 92.9%
4632972 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.75 67.0 6.54e-01 100.0% 95.6%
5011405 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 63.0 6.17e-01 100.0% 87.1%
4954540 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.74 66.0 5.46e-01 100.0% 94.5%
178 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.73 65.0 5.27e-01 100.0% 76.7%
3642150 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 60.0 5.21e-01 98.4% 58.9%
4316169 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.73 61.0 6.08e-01 100.0% 90.8%
186 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.73 63.0 6.23e-01 100.0% 91.2%
184578 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.72 63.0 4.79e-01 100.0% 72.1%
3375062 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.72 64.0 4.73e-01 100.0% 74.4%
5016524 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 65.0 4.89e-01 100.0% 65.5%
3934702 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 63.0 4.88e-01 100.0% 72.9%
3164943 1.1.9.11 beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.70 60.0 6.19e-01 98.4% 100.0%
3596642 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 62.0 5.56e-01 100.0% 71.8%
5061894 1.1.12.0 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins 0.70 63.0 5.38e-01 100.0% 74.0%
4518787 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 58.0 5.50e-01 100.0% 77.3%
4999514 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 60.0 4.61e-01 100.0% 82.7%
4072878 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 58.0 5.36e-01 100.0% 73.8%
869287 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.68 58.0 5.68e-01 100.0% 90.1%
4285594 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.68 62.0 4.90e-01 100.0% 54.4%
3590925 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.68 59.0 5.87e-01 100.0% 100.0%
4883586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 57.0 5.17e-01 100.0% 68.6%
5036802 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.67 54.0 4.18e-01 88.9% 79.3%
4366483 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 61.0 5.46e-01 100.0% 76.5%
4660673 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 60.0 5.42e-01 100.0% 76.5%
3267574 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 59.0 4.98e-01 98.4% 81.9%
4056039 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.66 57.0 4.67e-01 100.0% 52.2%
4269600 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.66 60.0 4.67e-01 100.0% 61.5%
4948219 1.1.9.54 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PAPS_reduct 0.65 56.0 5.35e-01 100.0% 96.0%
3666657 1.1.9.17 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_3 0.65 55.0 4.92e-01 100.0% 70.5%
5000763 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 57.0 5.09e-01 100.0% 80.0%
5046744 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 43.0 3.70e-01 76.2% 95.2%
4944433 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 43.0 3.61e-01 77.8% 84.3%
4316228 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.60 50.0 4.27e-01 100.0% 56.2%
2884685 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.58 49.0 3.72e-01 100.0% 44.4%
4154363 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.57 51.0 4.03e-01 100.0% 56.2%
3971511 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.57 37.0 3.16e-01 84.1% 40.0%
3315043 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.56 46.0 3.85e-01 93.7% 96.5%
1298640 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.56 38.0 2.66e-01 73.0% 37.7%
4254287 223.1.1.35 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.56 41.0 2.97e-01 82.5% 42.0%
4657303 244.1.1.5 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.54 40.0 3.28e-01 82.5% 88.8%
3645202 60.1.1.0 beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain 0.53 44.0 3.48e-01 95.2% 74.3%
5076775 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 37.0 2.99e-01 74.6% 60.0%
4988027 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.52 38.0 2.56e-01 81.0% 31.9%
3924542 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 34.0 2.94e-01 100.0% 39.1%
3937820 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 3.34e-01 74.6% 90.6%
4978781 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.50 44.0 3.31e-01 100.0% 39.4%