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OP172816.1__WAX16940.1__PD691P3_00055__00055

Bact-Vir

OP172816.1__WAX16940.1__PD691P3_00055__00055

Identity

Accession:
OP172816 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-68
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cb9A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.62 40.0 4.03e-01 75.4% 66.7%
2mfaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 36.0 3.73e-01 73.8% 66.7%
2jkdB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.55 38.0 3.03e-01 75.4% 83.6%
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.54 38.0 3.85e-01 73.8% 75.0%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.44e-01 78.7% 97.9%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.53 43.0 4.18e-01 95.1% 91.3%
2g0qA01 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.53 37.0 3.15e-01 75.4% 84.3%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 42.0 3.16e-01 91.8% 80.7%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.53 39.0 2.48e-01 82.0% 77.7%
7mjrA02 2.60.120.240 Mainly Beta › Sandwich › Jelly Rolls › Protective antigen, heptamerisation domain 0.53 39.0 2.78e-01 80.3% 76.3%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.52 36.0 3.68e-01 73.8% 86.9%
5u8rA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.48e-01 90.2% 80.6%
4hljA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.41e-01 90.2% 75.9%
2outA01 3.40.5.80 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 35.0 3.63e-01 73.8% 86.0%
2ibgA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.39e-01 85.2% 83.3%
3p9xA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.51 39.0 2.85e-01 88.5% 31.8%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.17e-01 85.2% 75.2%
2zxqA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 39.0 2.61e-01 90.2% 53.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3392646 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.61 50.0 3.18e-01 93.4% 40.3%
3300115 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.60 51.0 4.37e-01 100.0% 90.5%
3582833 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 49.0 4.11e-01 95.1% 90.9%
3858396 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 49.0 3.97e-01 96.7% 76.0%
4030871 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.59 41.0 3.99e-01 75.4% 77.1%
4886584 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.57 40.0 3.93e-01 75.4% 77.1%
5052992 1056.1.1.1 a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD 0.57 47.0 3.32e-01 98.4% 84.5%
4563833 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 39.0 2.46e-01 73.8% 30.6%
3803755 221.1.2.0 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.54 39.0 3.73e-01 78.7% 81.3%
4518867 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.54 39.0 3.49e-01 80.3% 81.1%
3207538 221.1.2.9 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › TyrRSs_C 0.53 43.0 3.63e-01 93.4% 77.3%
3929887 221.1.1.87 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 0.53 42.0 3.65e-01 96.7% 81.8%
3592518 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 2.90e-01 80.3% 78.8%
3483772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.54e-01 98.4% 56.8%
3932930 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.52 43.0 3.09e-01 100.0% 62.9%
3678552 2003.1.5.201 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25, Methyltransf_31 0.51 42.0 2.89e-01 100.0% 88.5%
1120363 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 41.0 3.36e-01 91.8% 75.4%
3775096 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.50 34.0 3.05e-01 70.5% 81.1%
3742058 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.50 39.0 2.32e-01 85.2% 19.6%
3998176 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 40.0 3.18e-01 93.4% 80.7%
5049182 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.50 40.0 2.86e-01 98.4% 42.9%
D2 high residues 76-142
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 53.0 5.38e-01 98.5% 78.8%
6kghA02 3.30.450.330 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 58.0 4.45e-01 100.0% 54.5%
3zg9B02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.65 53.0 3.37e-01 91.0% 78.7%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.64 34.0 3.10e-01 85.1% 39.8%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.61 47.0 3.79e-01 85.1% 41.3%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 47.0 3.55e-01 98.5% 36.2%
3ugvA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 46.0 3.80e-01 91.0% 84.1%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 45.0 3.57e-01 100.0% 75.9%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.62e-01 92.5% 51.9%
2d29A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.55 37.0 3.17e-01 70.1% 100.0%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.54 32.0 2.91e-01 73.1% 40.4%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.27e-01 88.1% 40.6%
4fdaA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 2.98e-01 91.0% 97.9%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 44.0 3.53e-01 92.5% 55.7%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 34.0 3.42e-01 79.1% 65.2%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.35e-01 94.0% 52.0%
2b5xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.37e-01 95.5% 83.1%
4fybA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 38.0 3.02e-01 83.6% 73.3%
4grfA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 3.20e-01 88.1% 81.4%
7b1cD01 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.50 34.0 3.21e-01 73.1% 100.0%
7px8A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 41.0 2.69e-01 88.1% 95.9%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3608576 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 62.0 5.31e-01 95.5% 65.7%
5046983 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 51.0 3.13e-01 83.6% 12.5%
4646999 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 58.0 5.39e-01 95.5% 83.1%
4472716 330.1.1.3 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.63 55.0 4.49e-01 100.0% 68.5%
3797648 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 53.0 4.96e-01 97.0% 75.3%
3702616 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 52.0 4.42e-01 100.0% 82.4%
3795915 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.62 47.0 4.24e-01 100.0% 58.0%
3819381 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.62 49.0 3.77e-01 88.1% 79.4%
3903350 386.1.1.280 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF27047 0.61 47.0 4.76e-01 100.0% 86.2%
3672736 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 51.0 3.88e-01 97.0% 52.6%
None 0.61 51.0 3.92e-01 97.0% 53.5%
3596829 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 53.0 4.53e-01 100.0% 60.0%
3849761 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 45.0 2.86e-01 89.6% 16.0%
3651076 2011.2.1.16 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF7894 0.58 51.0 3.52e-01 100.0% 80.9%
3536979 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.57 49.0 3.27e-01 100.0% 37.3%
4982374 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 44.0 3.40e-01 86.6% 73.1%
4616279 375.1.1.95 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 0.56 39.0 4.01e-01 73.1% 86.2%
3269253 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 42.0 3.60e-01 95.5% 48.7%
3964524 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 45.0 3.36e-01 95.5% 34.3%
3879180 2.1.1.170 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 0.55 42.0 3.41e-01 83.6% 74.8%
3963336 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.55 45.0 3.18e-01 97.0% 28.4%
5044376 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.55 46.0 2.96e-01 94.0% 27.1%
3491895 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.55 39.0 3.47e-01 94.0% 51.0%
3538471 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 41.0 3.44e-01 88.1% 45.8%
3396324 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 40.0 4.06e-01 83.6% 81.5%
3396837 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 44.0 4.35e-01 94.0% 95.7%
4634274 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 43.0 3.77e-01 91.0% 59.0%
3927132 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.54 44.0 3.80e-01 95.5% 75.7%
4392321 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 42.0 3.73e-01 91.0% 59.0%
3217617 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.33e-01 85.1% 44.8%
3481162 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.15e-01 71.6% 73.3%
3457323 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.52 40.0 3.40e-01 88.1% 74.4%
3957798 323.1.1.9 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat,WS_DGAT_C 0.52 44.0 2.72e-01 98.5% 32.8%
4029851 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.52 38.0 3.41e-01 94.0% 55.0%
4153203 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 37.0 3.11e-01 80.6% 88.5%
3648115 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 40.0 3.32e-01 89.6% 76.3%
3619214 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 38.0 4.06e-01 94.0% 100.0%
3967679 2484.6.1.1 mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD 0.50 42.0 3.76e-01 97.0% 85.0%