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OP172817.1__WAX16968.1__PD691P4_00024__00024
Bact-VirOP172817.1__WAX16968.1__PD691P4_00024__00024
Identity
- Accession:
- OP172817 ↗
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-87
Domain cluster:
rep: OP172676.1__WAX07329.1__BF698P3_00019__00019__D10-78
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mcfA00 | 3.40.50.11630 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.70 | 48.0 | 3.76e-01 | 71.8% | 59.5% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.69 | 48.0 | 4.26e-01 | 73.2% | 98.0% |
| 1bdyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.61 | 41.0 | 3.50e-01 | 74.6% | 40.7% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 42.0 | 4.06e-01 | 71.8% | 73.4% |
| 1y7xA02 | 2.30.30.550 | Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat | 0.59 | 38.0 | 4.19e-01 | 71.8% | 83.9% |
| 6kjhA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 42.0 | 2.76e-01 | 77.5% | 77.1% |
| 1nxuA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.58 | 39.0 | 3.16e-01 | 70.4% | 85.2% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.58 | 40.0 | 3.46e-01 | 71.8% | 62.5% |
| 3owrA00 | 2.60.40.4120 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 42.0 | 3.49e-01 | 77.5% | 55.1% |
| 2kr7A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 39.0 | 3.61e-01 | 71.8% | 80.9% |
| 1hq6B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.57 | 49.0 | 3.52e-01 | 100.0% | 72.4% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.57 | 39.0 | 3.37e-01 | 71.8% | 73.5% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.56 | 37.0 | 3.95e-01 | 71.8% | 81.7% |
| 3py9A04 | 2.60.40.2560 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 39.0 | 3.81e-01 | 73.2% | 66.7% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.63e-01 | 76.1% | 74.2% |
| 2dmkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 3.53e-01 | 76.1% | 73.8% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 3.26e-01 | 71.8% | 54.1% |
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 3.99e-01 | 100.0% | 75.2% |
| 1ciiA02 | 3.30.305.10 | Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 | 0.54 | 37.0 | 3.39e-01 | 73.2% | 85.1% |
| 4dohB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.30e-01 | 73.2% | 50.5% |
| 2cuiA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.28e-01 | 76.1% | 65.2% |
| 1z2zA02 | 3.30.70.3160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 40.0 | 3.79e-01 | 84.5% | 88.9% |
| 5jm6A02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.53 | 36.0 | 2.97e-01 | 71.8% | 73.4% |
| 3e9tB00 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.52 | 36.0 | 3.09e-01 | 71.8% | 54.9% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.52 | 36.0 | 3.38e-01 | 73.2% | 68.5% |
| 2byfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.70e-01 | 93.0% | 87.9% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 38.0 | 3.04e-01 | 80.3% | 57.5% |
| 3tesA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.10e-01 | 73.2% | 50.0% |
| 1vjvA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 42.0 | 2.85e-01 | 95.8% | 67.0% |
| 4fk5A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 39.0 | 2.60e-01 | 84.5% | 26.1% |
| 3e1uA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.50 | 38.0 | 2.89e-01 | 83.1% | 45.1% |
| 4dyoA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.50 | 34.0 | 2.88e-01 | 71.8% | 74.1% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 34.0 | 3.47e-01 | 71.8% | 84.5% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3508212 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.66 | 45.0 | 4.60e-01 | 71.8% | 81.4% |
| 3634674 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.66 | 47.0 | 3.03e-01 | 77.5% | 15.6% |
| 3551719 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 44.0 | 4.37e-01 | 71.8% | 77.3% |
| 3924156 | 11.2.1.16 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PKC_C2 | 0.63 | 42.0 | 3.52e-01 | 73.2% | 39.2% |
| 3257581 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.63 | 44.0 | 3.42e-01 | 73.2% | 50.0% |
| 3846627 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 43.0 | 3.83e-01 | 71.8% | 54.0% |
| 3896560 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.62 | 45.0 | 3.47e-01 | 78.9% | 46.5% |
| 3740549 | 821.1.1.10 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 | 0.62 | 45.0 | 3.55e-01 | 77.5% | 42.6% |
| 3607639 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.61 | 42.0 | 2.68e-01 | 71.8% | 13.7% |
| 3929121 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 44.0 | 3.78e-01 | 76.1% | 71.3% |
| 3875464 | 11.1.1.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,A2M_BRD | 0.61 | 43.0 | 2.57e-01 | 73.2% | 11.9% |
| 5052397 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 44.0 | 3.46e-01 | 77.5% | 52.9% |
| 3869063 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.60 | 42.0 | 3.84e-01 | 73.2% | 56.8% |
| 3405278 | 382.1.1.3 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp | 0.60 | 45.0 | 4.13e-01 | 84.5% | 76.0% |
| 3705484 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.59 | 38.0 | 4.20e-01 | 71.8% | 85.5% |
| 3933685 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.59 | 46.0 | 4.26e-01 | 88.7% | 100.0% |
| 3475388 | 11.1.1.804 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 | 0.58 | 45.0 | 3.81e-01 | 85.9% | 65.6% |
| 5060116 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 40.0 | 3.58e-01 | 73.2% | 54.3% |
| 3790957 | 3562.1.1.21 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › NRF | 0.58 | 45.0 | 3.47e-01 | 88.7% | 47.8% |
| 3571257 | 5089.1.1.3 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin | 0.57 | 45.0 | 3.17e-01 | 88.7% | 86.1% |
| 3570332 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 47.0 | 4.03e-01 | 91.5% | 79.1% |
| 3922317 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 39.0 | 2.99e-01 | 73.2% | 40.0% |
| 3413442 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 44.0 | 4.27e-01 | 90.1% | 81.2% |
| 4001453 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.56 | 40.0 | 2.77e-01 | 76.1% | 41.2% |
| 3879556 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.55 | 46.0 | 3.54e-01 | 100.0% | 91.1% |
| 3607994 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 48.0 | 3.34e-01 | 100.0% | 51.0% |
| 3705471 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.55 | 37.0 | 4.13e-01 | 71.8% | 90.9% |
| 3489664 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 38.0 | 3.27e-01 | 73.2% | 56.7% |
| 3268123 | 192.15.1.184 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › RA | 0.55 | 45.0 | 4.02e-01 | 91.5% | 86.7% |
| 3797635 | 3226.1.1.0 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA | 0.55 | 43.0 | 2.57e-01 | 85.9% | 70.1% |
| 3448678 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.55 | 38.0 | 3.02e-01 | 71.8% | 44.8% |
| 3593781 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.54 | 37.0 | 4.11e-01 | 71.8% | 94.5% |
| 3280259 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 37.0 | 3.62e-01 | 73.2% | 75.9% |
| 2741079 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.53 | 36.0 | 3.63e-01 | 71.8% | 85.9% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.53 | 36.0 | 3.46e-01 | 71.8% | 69.4% |
| 1442666 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.53 | 36.0 | 3.49e-01 | 71.8% | 77.8% |
| 1145963 | 4012.3.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI | 0.52 | 37.0 | 3.39e-01 | 76.1% | 63.0% |
| 3484264 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 37.0 | 3.65e-01 | 77.5% | 91.3% |
| 3574338 | 101.1.21.0 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase | 0.52 | 42.0 | 2.97e-01 | 93.0% | 80.8% |
| 3635637 | 212.1.1.12 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 | 0.52 | 35.0 | 2.87e-01 | 71.8% | 59.3% |
| 3271036 | 375.3.1.1 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL | 0.52 | 36.0 | 3.36e-01 | 71.8% | 89.9% |
| 3994747 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.52 | 44.0 | 3.65e-01 | 97.2% | 81.5% |
| 3593797 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.51 | 32.0 | 3.53e-01 | 71.8% | 83.6% |
| 3543786 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 35.0 | 3.21e-01 | 71.8% | 55.8% |