←Back to structures

OP172818.1__WAX17010.1__PD691P6_00005__00005

Bact-Vir

OP172818.1__WAX17010.1__PD691P6_00005__00005

Identity

Accession:
OP172818 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Parabacteroides_phage_PD691P6

TaxID: 2968690

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-70
PDB
Domain cluster: rep: NC_023502.1__YP_009003231.1__CC53_gp074__00074__D9-78
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 6.55e-01 100.0% 87.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 6.04e-01 98.5% 93.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 55.0 6.00e-01 95.5% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 5.17e-01 92.5% 81.4%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.65 58.0 5.04e-01 97.0% 84.2%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.80e-01 98.5% 98.4%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 4.29e-01 100.0% 48.7%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.00e-01 97.0% 86.6%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 56.0 4.80e-01 100.0% 81.5%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 56.0 5.62e-01 100.0% 98.5%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 57.0 4.78e-01 100.0% 85.2%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 54.0 5.18e-01 98.5% 85.7%
2greF02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.60 43.0 4.14e-01 95.5% 65.4%
2kcdA00 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.58 43.0 3.62e-01 82.1% 49.2%
3fmaA00 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.57 35.0 3.36e-01 98.5% 51.9%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 45.0 3.60e-01 94.0% 96.8%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.56 47.0 3.51e-01 100.0% 80.5%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.37e-01 95.5% 98.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 42.0 3.83e-01 98.5% 59.3%
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.55 47.0 3.40e-01 98.5% 58.0%
4iqzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 42.0 3.76e-01 85.1% 80.0%
1ywmA01 2.60.500.10 Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain 0.54 40.0 3.57e-01 79.1% 63.3%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 40.0 3.25e-01 83.6% 87.1%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.53 30.0 2.87e-01 98.5% 44.9%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.52e-01 100.0% 83.2%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 41.0 3.39e-01 88.1% 73.4%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.40e-01 100.0% 85.0%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.40e-01 100.0% 84.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.38e-01 97.0% 87.8%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.51 44.0 3.53e-01 100.0% 92.9%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.57e-01 92.5% 64.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.77 65.0 6.11e-01 97.0% 76.2%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 63.0 5.91e-01 97.0% 77.5%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.74 62.0 6.13e-01 97.0% 87.1%
3781383 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.05e-01 100.0% 64.4%
4026193 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.70e-01 98.5% 96.5%
3229356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.29e-01 100.0% 88.6%
3786978 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 60.0 5.97e-01 95.5% 98.6%
3923767 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 58.0 5.24e-01 92.5% 78.9%
3339162 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.68 62.0 4.92e-01 100.0% 73.8%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.68 60.0 5.83e-01 97.0% 93.3%
3287628 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.76e-01 95.5% 95.3%
3859965 4.1.1.107 ↗ beta barrels › SH3 › SH3 › SH3 › XRN1_D1 0.66 58.0 4.18e-01 97.0% 65.8%
3952707 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 4.71e-01 100.0% 67.7%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.32e-01 100.0% 81.2%
4020096 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 59.0 4.62e-01 100.0% 83.6%
3484620 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 58.0 5.18e-01 100.0% 89.5%
3661025 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.65 58.0 4.84e-01 100.0% 91.3%
3489469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 4.87e-01 97.0% 81.9%
3993273 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.64 58.0 4.73e-01 100.0% 70.0%
3177842 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 57.0 4.67e-01 98.5% 62.5%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 54.0 5.06e-01 100.0% 76.5%
5082947 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.63 42.0 2.85e-01 80.6% 20.0%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 57.0 5.47e-01 100.0% 97.4%
4483091 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 4.73e-01 97.0% 66.7%
157323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 56.0 5.62e-01 100.0% 98.5%
559 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 57.0 4.78e-01 100.0% 85.2%
None — 0.62 54.0 3.52e-01 97.0% 24.5%
4162968 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 51.0 4.86e-01 100.0% 78.5%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 5.16e-01 94.0% 90.0%
4611577 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 49.0 4.65e-01 88.1% 88.7%
3965564 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.58 46.0 3.97e-01 85.1% 81.9%
4930398 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 49.0 4.91e-01 97.0% 100.0%
5037173 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 48.0 4.30e-01 98.5% 65.3%
4037563 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 45.0 3.79e-01 85.1% 73.0%
3700518 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 49.0 4.02e-01 100.0% 61.5%
3584246 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.56 48.0 4.17e-01 97.0% 83.7%
3597361 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.56 47.0 3.91e-01 100.0% 58.5%
3675330 1.1.1.10 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_N 0.55 39.0 2.98e-01 76.1% 98.9%
3854230 269.1.1.1 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.55 41.0 2.69e-01 83.6% 57.9%
4236774 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.53 40.0 3.32e-01 82.1% 88.8%
4950190 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.53 42.0 3.41e-01 89.6% 97.8%
3230062 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.53 37.0 3.26e-01 80.6% 49.0%
3389935 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.53 43.0 3.94e-01 91.0% 98.9%
5045122 221.1.3.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain › Oxidored_molyb 0.52 43.0 3.37e-01 95.5% 61.3%
3401098 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.52 45.0 3.75e-01 100.0% 59.2%
4172288 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.52 40.0 3.66e-01 85.1% 93.3%
3672433 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.51 37.0 2.48e-01 98.5% 17.9%
3210587 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 43.0 3.64e-01 100.0% 68.3%
5047349 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.50 39.0 3.63e-01 92.5% 77.9%
3523220 395.1.1.1 ↗ few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › PTN_MK_C 0.50 32.0 3.56e-01 77.6% 88.0%