Back to structures

OP172819.1__WAX17084.1__PF672P1_00026__00026

Bact-Vir

OP172819.1__WAX17084.1__PF672P1_00026__00026

Identity

Accession:
OP172819 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-61
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.77 61.0 5.17e-01 86.2% 100.0%
2hd3K00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.73 57.0 4.83e-01 84.5% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.48e-01 94.8% 85.7%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 4.49e-01 100.0% 70.9%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 4.64e-01 100.0% 74.4%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.56e-01 100.0% 95.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 5.24e-01 96.6% 83.3%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.65 57.0 5.23e-01 100.0% 84.4%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.64 50.0 3.77e-01 91.4% 34.3%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.64 49.0 3.17e-01 89.7% 32.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 5.12e-01 94.8% 85.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 5.03e-01 94.8% 81.8%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.95e-01 96.6% 84.9%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.92e-01 94.8% 87.1%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.62 51.0 5.15e-01 94.8% 96.6%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 48.0 4.40e-01 87.9% 98.8%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 49.0 3.06e-01 89.7% 22.7%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 52.0 4.29e-01 98.3% 59.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 53.0 5.29e-01 100.0% 100.0%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 42.0 3.02e-01 75.9% 69.0%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.60 51.0 4.60e-01 100.0% 75.9%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 50.0 4.76e-01 98.3% 82.9%
4ubtD00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 50.0 3.09e-01 96.6% 58.2%
4b9wA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.38e-01 75.9% 76.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.33e-01 100.0% 86.2%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 39.0 2.84e-01 72.4% 64.6%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 42.0 3.34e-01 82.8% 73.8%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 44.0 2.84e-01 89.7% 22.4%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.51e-01 86.2% 82.3%
7jptA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 48.0 3.69e-01 100.0% 88.4%
3gm8A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.28e-01 77.6% 93.6%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.54 43.0 3.69e-01 93.1% 97.2%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.23e-01 100.0% 70.7%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 40.0 2.49e-01 84.5% 46.5%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 37.0 2.71e-01 75.9% 64.4%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 39.0 4.03e-01 89.7% 87.5%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 38.0 4.01e-01 87.9% 94.2%
2lttA00 2.30.31.70 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 36.0 3.48e-01 79.3% 64.9%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 39.0 3.34e-01 89.7% 73.0%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 40.0 3.41e-01 91.4% 84.3%
8dajA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 2.59e-01 86.2% 35.2%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.34e-01 87.9% 93.5%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.01e-01 87.9% 81.1%
7bspA01 2.70.150.10 Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A 0.50 40.0 3.10e-01 94.8% 78.3%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 39.0 2.60e-01 87.9% 41.9%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.08e-01 89.7% 76.9%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999482 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.79 69.0 5.56e-01 96.6% 80.9%
4457231 2.16.1.1 beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL 0.79 63.0 5.20e-01 86.2% 99.0%
4224915 2.16.1.1 beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL 0.78 63.0 5.17e-01 86.2% 98.0%
3415831 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.76 66.0 5.16e-01 96.6% 79.2%
3931053 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.76 66.0 5.45e-01 96.6% 93.0%
3465215 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.75 67.0 5.04e-01 100.0% 68.9%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 64.0 6.16e-01 96.6% 86.2%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.60e-01 100.0% 81.1%
3743614 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.73 62.0 6.22e-01 98.3% 91.7%
3706730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.78e-01 100.0% 100.0%
3924760 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.54e-01 100.0% 74.4%
3215393 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.72 62.0 4.63e-01 98.3% 39.3%
3974490 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 61.0 5.59e-01 100.0% 78.8%
3743464 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 62.0 5.77e-01 100.0% 97.3%
3931715 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 59.0 4.91e-01 91.4% 98.0%
5043697 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 59.0 5.69e-01 98.3% 81.5%
3302166 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 62.0 6.01e-01 98.3% 89.2%
3216019 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.73e-01 94.8% 98.5%
3886139 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 60.0 5.84e-01 96.6% 86.2%
3177469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.58e-01 96.6% 87.1%
3546727 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 60.0 4.91e-01 100.0% 65.7%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.64e-01 98.3% 92.9%
3607981 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.46e-01 98.3% 83.8%
3267804 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 58.0 4.88e-01 96.6% 88.0%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 58.0 5.66e-01 98.3% 100.0%
3936442 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 58.0 4.85e-01 98.3% 82.0%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 56.0 5.38e-01 94.8% 83.1%
4086925 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.66 53.0 5.16e-01 94.8% 81.5%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.21e-01 98.3% 80.0%
4037383 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 54.0 5.25e-01 94.8% 83.1%
4158157 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 54.0 5.25e-01 94.8% 83.1%
3782925 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 52.0 4.52e-01 93.1% 69.5%
4201878 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 55.0 5.34e-01 98.3% 86.2%
4537309 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.64 44.0 3.75e-01 84.5% 44.2%
3265170 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 51.0 4.98e-01 94.8% 83.1%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 51.0 5.04e-01 96.6% 84.6%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.08e-01 96.6% 86.2%
4146937 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.09e-01 98.3% 86.2%
142633 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.03e-01 94.8% 81.8%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 52.0 5.05e-01 98.3% 86.2%
4135259 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 51.0 4.97e-01 96.6% 86.2%
4284764 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 50.0 4.93e-01 98.3% 86.2%
3950208 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 50.0 4.93e-01 98.3% 86.2%
3540253 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.61 52.0 4.49e-01 98.3% 67.4%
4980001 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 45.0 3.71e-01 82.8% 87.0%
4101580 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 50.0 4.89e-01 98.3% 87.7%
4041586 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 49.0 4.85e-01 98.3% 86.2%
4877991 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 50.0 4.27e-01 98.3% 74.0%
2138090 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 47.0 4.65e-01 94.8% 83.1%
4028885 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 48.0 4.75e-01 96.6% 86.2%
4524363 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 49.0 4.83e-01 98.3% 86.2%
164975 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.60 51.0 4.61e-01 100.0% 76.8%
4345080 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 48.0 4.71e-01 98.3% 87.7%
3979903 4.1.1.465 beta barrels › SH3 › SH3 › SH3 › SH3_6, SH3_7 0.59 51.0 3.29e-01 98.3% 30.2%
5072932 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 50.0 4.96e-01 98.3% 98.3%
3590827 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 47.0 4.59e-01 100.0% 86.2%
4932581 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.59 44.0 4.26e-01 87.9% 73.8%
4982958 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.58 49.0 4.24e-01 100.0% 78.0%
4213539 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 46.0 4.51e-01 94.8% 83.1%
3306779 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 46.0 4.51e-01 96.6% 84.6%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.53e-01 98.3% 87.7%
6235 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 39.0 2.83e-01 74.1% 62.4%
3664617 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.57 44.0 3.97e-01 89.7% 65.9%
3626321 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 40.0 4.14e-01 79.3% 83.6%
3651207 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.55 39.0 2.61e-01 77.6% 17.3%
3784708 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.55 43.0 3.88e-01 89.7% 96.5%
3988706 243.3.1.13 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.55 40.0 3.89e-01 89.7% 70.0%
3576726 5.1.2.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase 0.54 40.0 2.50e-01 89.7% 22.0%
3506301 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.53 41.0 3.06e-01 91.4% 63.8%
3596826 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.76e-01 98.3% 86.0%
3839839 4.1.1.84 beta barrels › SH3 › SH3 › SH3 › SH3_7 0.53 43.0 3.84e-01 96.6% 85.6%
3676609 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 41.0 2.67e-01 89.7% 21.0%
4819138 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 34.0 3.65e-01 70.7% 80.9%
3355345 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 39.0 3.72e-01 86.2% 74.3%
3589569 243.3.1.13 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.51 38.0 3.84e-01 89.7% 85.0%
3293986 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.51 37.0 2.43e-01 82.8% 69.7%
3737863 708.1.2.11 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 0.51 37.0 3.16e-01 82.8% 47.6%
4940634 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.50 41.0 3.22e-01 98.3% 57.9%