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OP172819.1__WAX17103.1__PF672P1_00045__00045

Bact-Vir

OP172819.1__WAX17103.1__PF672P1_00045__00045

Identity

Accession:
OP172819 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Parabacteroides_phage_PF672P1

TaxID: 2968684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vluA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.69 52.0 3.27e-01 81.6% 64.5%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.63 52.0 4.42e-01 95.9% 61.2%
3cazB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 52.0 3.49e-01 98.0% 80.5%
6mzbB03 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.60 48.0 2.95e-01 93.9% 55.9%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.55 43.0 3.06e-01 93.9% 79.2%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 43.0 3.72e-01 93.9% 70.5%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 43.0 2.90e-01 89.8% 52.7%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.51 39.0 3.11e-01 81.6% 75.8%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.48e-01 81.6% 59.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3941216 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.60 50.0 3.97e-01 100.0% 61.7%
4986745 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.01e-01 95.9% 69.8%
3555578 633.22.1.15 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › OST3_OST6 0.51 39.0 3.25e-01 95.9% 93.6%
D2 medium residues 52-173
PDB
Domain cluster: rep: OR296439.1__WLZ21152.1__C341T2LP_00006__00006__D78-188
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pxzA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 66.0 4.68e-01 90.2% 57.2%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.71 60.0 5.55e-01 91.0% 73.9%
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.71 64.0 5.84e-01 96.7% 88.6%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 59.0 4.75e-01 91.0% 79.9%
2f3lA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.70 56.0 5.43e-01 83.6% 78.8%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.67 59.0 5.04e-01 95.1% 85.0%
2qyuA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.66 56.0 5.16e-01 91.8% 92.4%
2w7zA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.66 57.0 4.74e-01 93.4% 69.1%
3n6zA01 2.160.20.110 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 57.0 4.51e-01 98.4% 84.9%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.65 49.0 5.41e-01 85.2% 99.0%
2yuhA01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 56.0 5.04e-01 95.1% 84.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838073 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.78 57.0 6.21e-01 86.1% 91.0%
3963707 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.77 50.0 5.96e-01 80.3% 100.0%
3187916 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 63.0 5.12e-01 91.8% 70.9%
3599244 207.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.72 63.0 5.60e-01 93.4% 87.6%
5058805 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.72 64.0 4.28e-01 95.9% 82.9%
3722181 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.72 55.0 5.86e-01 85.2% 92.4%
158287 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.71 64.0 5.75e-01 96.7% 89.0%
2833314 207.2.1.25 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA 0.71 63.0 4.23e-01 95.1% 40.0%
3830293 208.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.70 48.0 5.53e-01 81.1% 100.0%
3496891 207.8.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD 0.70 59.0 3.97e-01 91.8% 94.2%
3713644 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.70 59.0 4.98e-01 90.2% 74.9%
3492291 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.69 61.0 5.58e-01 96.7% 73.6%
4024907 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.69 60.0 5.96e-01 92.6% 93.6%
3717140 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.69 56.0 4.94e-01 86.9% 77.1%
3744798 208.1.1.43 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DUF1720 0.69 59.0 5.46e-01 91.0% 87.3%
4025775 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.67 55.0 5.68e-01 86.9% 95.7%
3786676 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.66 57.0 5.22e-01 92.6% 77.4%
3229795 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.66 54.0 4.99e-01 89.3% 97.5%
4968617 208.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.65 44.0 4.80e-01 88.5% 83.0%
3877532 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.59 50.0 4.68e-01 91.0% 78.0%
4461157 1160.1.1.1 ↗ beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N 0.55 41.0 3.81e-01 89.3% 60.0%