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OP172819.1__WAX17108.1__PF672P1_00050__00050

Bact-Vir

OP172819.1__WAX17108.1__PF672P1_00050__00050

Identity

Accession:
OP172819 ↗
Kingdom:
phage

Quality

59.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Parabacteroides_phage_PF672P1

TaxID: 2968684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 106-190
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mgvA00 3.30.10.20 Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › 0.56 39.0 4.33e-01 89.4% 95.4%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 44.0 3.45e-01 89.4% 97.5%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.54 48.0 4.38e-01 98.8% 80.9%
4ka7A01 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.54 45.0 3.02e-01 100.0% 45.7%
2x8xX03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 36.0 3.70e-01 100.0% 74.7%
1op4A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.52 40.0 3.99e-01 88.2% 97.8%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 38.0 3.86e-01 100.0% 81.7%
4ifdI01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 4.13e-01 87.1% 98.8%
1gzeA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.50 43.0 3.34e-01 100.0% 84.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4020460 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 41.0 2.84e-01 71.8% 37.6%
3971095 4334.1.1.0 ↗ beta complex topology › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins 0.58 42.0 4.32e-01 89.4% 81.2%
3824883 3121.1.1.0 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.53 37.0 3.71e-01 100.0% 72.9%
3850055 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 41.0 3.01e-01 89.4% 37.6%
D2 high residues 790-894
PDB
Domain cluster: rep: MN871446.1__UKS71963.1__KpLz245_0970__00097__D488-572
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 56.0 6.09e-01 88.6% 96.6%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.71 58.0 6.16e-01 88.6% 100.0%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.69 55.0 5.85e-01 86.7% 98.9%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.67 57.0 5.71e-01 93.3% 92.7%
3zx1A01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.66 49.0 4.23e-01 77.1% 65.0%
1rfmA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.59 45.0 3.64e-01 81.9% 79.1%
3vueA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 42.0 3.17e-01 79.0% 90.6%
1jmxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 33.0 3.13e-01 87.6% 50.8%
5fc9A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 37.0 3.92e-01 72.4% 84.2%
4fchA01 2.60.40.3620 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.98e-01 78.1% 93.6%
2g23K04 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.53 45.0 3.68e-01 90.5% 83.7%
3mteA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 3.57e-01 94.3% 90.4%
1uwvA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.40e-01 90.5% 71.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.73 58.0 6.29e-01 88.6% 100.0%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.71 59.0 6.19e-01 89.5% 100.0%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.71 58.0 6.06e-01 89.5% 97.9%
4561709 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 57.0 6.08e-01 88.6% 100.0%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.67 57.0 5.71e-01 93.3% 92.7%
3840065 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.59 48.0 3.77e-01 89.5% 43.2%
5056110 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 47.0 4.32e-01 85.7% 70.4%
5027635 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 47.0 4.67e-01 85.7% 85.2%
4940715 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 46.0 4.57e-01 84.8% 86.4%
4948172 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.55 44.0 4.60e-01 85.7% 94.7%
3401829 3698.1.1.2 ↗ beta sandwiches › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › Arginine methyltransferase oligomerization subdomain › PRMT_C 0.53 40.0 3.48e-01 81.0% 94.5%
5011819 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.52 45.0 3.42e-01 96.2% 66.2%
5067836 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.52 46.0 3.52e-01 99.0% 63.6%
4981578 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 38.0 3.86e-01 90.5% 77.1%
5009533 314.1.1.12 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.51 45.0 3.45e-01 99.0% 63.5%
3593385 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.51 44.0 3.40e-01 92.4% 63.6%
D3 medium residues 214-328
PDB
D4 medium residues 407-466
PDB
D5 medium residues 467-517
PDB
D6 medium residues 518-599
PDB
D7 medium residues 600-699
PDB
D8 medium residues 700-784
PDB