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OP172819.1__WAX17127.1__PF672P1_00069__00069

Bact-Vir

OP172819.1__WAX17127.1__PF672P1_00069__00069

Identity

Accession:
OP172819 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-123
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.67 42.0 4.95e-01 84.4% 91.9%
1cukA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 37.0 4.55e-01 89.0% 97.0%
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 4.13e-01 89.9% 63.7%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 41.0 4.70e-01 89.9% 92.7%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 35.0 4.46e-01 89.0% 100.0%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 34.0 4.28e-01 89.0% 96.9%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 4.28e-01 85.3% 80.2%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 4.33e-01 96.3% 75.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.58 27.0 3.36e-01 74.3% 70.1%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 43.0 4.04e-01 80.7% 89.1%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 30.0 3.46e-01 73.4% 74.3%
1o7iB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.98e-01 91.7% 73.7%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 41.0 3.91e-01 81.7% 72.5%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.53 35.0 3.87e-01 81.7% 86.0%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.71e-01 91.7% 78.7%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 4.08e-01 94.5% 84.6%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 3.76e-01 82.6% 95.4%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.69e-01 90.8% 70.2%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 41.0 4.23e-01 89.0% 91.4%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 37.0 3.70e-01 79.8% 98.3%
5jheA01 2.40.100.10 Mainly Beta › Beta Barrel › Cyclophilin › Cyclophilin-like 0.50 40.0 3.33e-01 87.2% 84.0%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
426155 2.24.1.1 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.65 39.0 4.69e-01 87.2% 91.5%
4932581 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.62 36.0 4.46e-01 83.5% 95.4%
3197575 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.62 42.0 4.54e-01 98.2% 84.4%
3508573 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.30e-01 93.6% 73.3%
4309225 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.61 36.0 4.47e-01 89.0% 98.5%
3314075 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.61 38.0 3.89e-01 81.7% 64.8%
4330612 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.60 35.0 4.39e-01 89.0% 96.9%
4012257 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 44.0 4.39e-01 100.0% 73.7%
4886291 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.59 35.0 4.36e-01 88.1% 100.0%
4416106 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.58 43.0 4.02e-01 100.0% 63.4%
4599318 2.1.1.299 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 0.58 40.0 4.55e-01 89.0% 97.5%
3216019 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 29.0 3.59e-01 74.3% 80.0%
3268888 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.57 42.0 4.55e-01 85.3% 92.2%
3393168 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.50e-01 94.5% 82.7%
3598854 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 42.0 3.90e-01 89.0% 60.7%
5001168 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.57 42.0 4.41e-01 88.1% 85.0%
4958552 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 34.0 3.43e-01 88.1% 58.3%
4882592 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.56 42.0 3.83e-01 89.0% 58.9%
3492348 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.56 45.0 4.09e-01 93.6% 64.8%
4943942 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 4.25e-01 90.8% 81.0%
5036293 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 4.26e-01 96.3% 83.0%
5078763 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 4.22e-01 89.0% 79.1%
5028505 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.55 42.0 3.86e-01 89.0% 61.4%
4940586 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 4.06e-01 94.5% 71.7%
2579126 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.55 42.0 3.83e-01 89.0% 59.7%
4980055 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.55 41.0 4.18e-01 91.7% 78.2%
3603237 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 4.13e-01 89.9% 79.0%
3996060 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.55 43.0 3.98e-01 90.8% 65.0%
4014974 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.23e-01 91.7% 32.6%
5030410 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 41.0 4.37e-01 94.5% 89.5%
5041944 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 41.0 4.24e-01 90.8% 82.9%
1549576 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.55 43.0 4.02e-01 89.9% 67.2%
4646070 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 4.23e-01 89.0% 80.9%
4316390 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.54 33.0 3.96e-01 83.5% 100.0%
5030515 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 42.0 4.13e-01 91.7% 77.4%
5028149 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 4.17e-01 91.7% 78.3%
3680289 264.1.1.0 beta barrels › LigT-like › LigT-related › LigT-related 0.54 46.0 3.84e-01 94.5% 97.9%
3997678 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 45.0 4.52e-01 100.0% 90.9%
4978172 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.54 40.0 4.21e-01 90.8% 88.4%
3614430 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 46.0 3.99e-01 100.0% 61.9%
4997227 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.54 40.0 3.90e-01 89.0% 70.8%
3491654 2.1.1.89 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term 0.54 48.0 4.30e-01 100.0% 83.2%
5078956 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.54 40.0 4.08e-01 94.5% 78.2%
3642408 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.67e-01 94.5% 59.3%
3474148 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 4.36e-01 93.6% 82.5%
5054824 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 40.0 3.94e-01 91.7% 73.9%
3914285 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.97e-01 92.7% 85.6%
5066015 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.53 39.0 3.97e-01 90.8% 80.0%
3901699 2.1.1.173 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RADX 0.53 43.0 3.81e-01 96.3% 61.3%
5045009 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.52 41.0 3.89e-01 91.7% 70.4%
4014971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 3.78e-01 90.8% 66.9%
4974918 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 38.0 3.94e-01 91.7% 79.0%
5082512 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 40.0 4.08e-01 91.7% 81.8%
5047681 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 40.0 3.88e-01 90.8% 71.2%
4940587 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 39.0 3.95e-01 90.8% 78.2%
3926357 2.3.1.1 beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.52 44.0 4.02e-01 90.8% 75.7%
3550844 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 38.0 3.40e-01 78.0% 83.1%
3643736 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.52 41.0 3.79e-01 94.5% 64.8%
4004698 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.52 35.0 4.05e-01 85.3% 100.0%
5037301 2.1.1.111 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.51 38.0 4.07e-01 94.5% 90.4%
5037132 2.1.1.127 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.51 40.0 3.79e-01 89.9% 67.9%
3326221 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 4.36e-01 89.0% 95.8%
3445196 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.80e-01 96.3% 67.9%
3931674 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 42.0 4.13e-01 89.9% 87.0%
3595817 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 44.0 4.45e-01 100.0% 96.4%
D2 medium residues 141-177
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.63 48.0 3.49e-01 83.8% 32.7%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.62 50.0 4.98e-01 100.0% 92.7%
5afdA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.61 49.0 2.96e-01 100.0% 17.0%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.60 39.0 3.02e-01 100.0% 31.2%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.60 41.0 3.53e-01 91.9% 44.3%
4jbeB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 43.0 2.64e-01 97.3% 15.4%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 43.0 2.90e-01 97.3% 96.1%
3tmpA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 42.0 2.87e-01 100.0% 24.0%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.52 36.0 3.01e-01 91.9% 53.1%
1wwuA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.51 34.0 3.00e-01 70.3% 39.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046186 2006.1.4.50 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.70 55.0 3.75e-01 100.0% 27.9%
3797530 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 52.0 4.58e-01 100.0% 55.4%
4089208 101.1.1.25 alpha arrays › HTH › HTH › Three-helical HTH › DUF433 0.65 52.0 4.53e-01 100.0% 58.5%
1515939 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.64 48.0 2.81e-01 83.8% 10.6%
1675309 601.51.1.1 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin › Flagellin_N 0.64 43.0 3.11e-01 94.6% 26.0%
4843090 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.63 53.0 3.87e-01 100.0% 81.2%
3343807 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.03e-01 100.0% 44.7%
4870551 101.1.10.14 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 0.61 41.0 3.28e-01 73.0% 31.8%
3287880 148.1.3.236 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31033 0.60 42.0 2.99e-01 75.7% 76.9%
4205837 7524.1.1.0 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like 0.58 41.0 2.55e-01 78.4% 20.8%
4312032 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.57 42.0 2.76e-01 100.0% 83.8%
3694011 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 38.0 2.67e-01 100.0% 70.8%
3418158 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.52 40.0 2.63e-01 100.0% 73.3%