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OP172819.1__WAX17128.1__PF672P1_00070__00070

Bact-Vir

OP172819.1__WAX17128.1__PF672P1_00070__00070

Identity

Accession:
OP172819 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 60-209
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k93A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.80 73.0 6.29e-01 100.0% 65.0%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.75 45.0 5.62e-01 96.0% 97.8%
4r5qA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.73 48.0 4.20e-01 100.0% 45.6%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.68 54.0 4.91e-01 100.0% 63.1%
5zyuA01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.67 61.0 5.48e-01 100.0% 72.1%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.63 59.0 4.81e-01 100.0% 63.2%
1w36B05 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.63 58.0 4.66e-01 100.0% 77.3%
2xi5A00 3.40.91.60 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.61 47.0 4.39e-01 94.0% 65.8%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 47.0 5.15e-01 84.7% 97.6%
6p4wB01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.59 41.0 4.77e-01 88.0% 98.2%
4da2A02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 48.0 4.81e-01 88.7% 98.7%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 49.0 3.80e-01 95.3% 53.2%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 50.0 3.89e-01 96.0% 62.3%
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 40.0 4.04e-01 93.3% 72.7%
3vx8A02 3.40.140.70 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 N-terminal domain 0.53 41.0 3.99e-01 98.0% 73.8%
6p66D01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.53 37.0 4.26e-01 92.7% 100.0%
3odhA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 39.0 3.56e-01 97.3% 59.3%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 40.0 4.08e-01 88.7% 84.6%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4943737 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 61.0 6.03e-01 100.0% 80.6%
4559667 2008.1.1.50 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ 0.74 69.0 5.56e-01 100.0% 63.9%
4332382 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.72 53.0 5.92e-01 96.7% 95.8%
4139009 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.71 53.0 5.95e-01 95.3% 100.0%
4311371 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.70 54.0 5.97e-01 96.7% 99.2%
3588071 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 58.0 5.67e-01 100.0% 80.6%
3976411 2008.1.1.58 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 0.70 66.0 5.41e-01 100.0% 72.8%
4489809 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 64.0 5.06e-01 100.0% 83.7%
4534629 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.68 52.0 5.76e-01 94.0% 100.0%
4501322 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 63.0 5.40e-01 99.3% 82.2%
5035773 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.68 47.0 4.84e-01 94.0% 73.1%
3629495 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 64.0 5.01e-01 100.0% 59.0%
4002824 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.67 63.0 4.97e-01 100.0% 61.7%
4651551 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.66 56.0 5.92e-01 96.7% 99.3%
3005282 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.65 50.0 5.42e-01 95.3% 95.2%
5016554 2008.1.1.51 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC 0.65 50.0 5.09e-01 99.3% 80.7%
5031791 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.64 43.0 5.06e-01 85.3% 97.1%
3884920 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.64 50.0 4.95e-01 96.7% 76.9%
5051988 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 44.0 4.84e-01 85.3% 87.5%
4477991 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.63 55.0 4.59e-01 92.7% 68.2%
4060254 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.62 56.0 4.61e-01 94.0% 65.2%
4414555 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.62 55.0 4.47e-01 93.3% 67.6%
4951715 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.62 45.0 5.03e-01 86.0% 97.4%
3386283 2008.1.1.100 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 0.60 55.0 4.82e-01 99.3% 88.4%
5032419 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 53.0 4.78e-01 96.0% 82.0%
4955318 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.59 44.0 4.71e-01 87.3% 89.1%
4960251 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.59 48.0 5.04e-01 93.3% 94.7%
None 0.59 56.0 4.37e-01 100.0% 57.1%
3262617 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 42.0 4.79e-01 72.0% 100.0%
5074941 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 40.0 4.56e-01 87.3% 93.6%
4239877 2008.1.1.97 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.59 55.0 4.22e-01 100.0% 57.5%
4973776 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.59 50.0 5.08e-01 92.7% 98.0%
4411889 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 48.0 4.26e-01 90.0% 60.5%
2116981 2008.1.1.66 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ArenaCapSnatch 0.58 45.0 4.17e-01 83.3% 63.4%
3386658 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.58 51.0 4.81e-01 92.7% 83.4%
3725674 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.57 50.0 4.98e-01 96.7% 90.2%
5072639 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 49.0 4.89e-01 92.7% 92.5%
5079137 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.57 48.0 5.00e-01 90.0% 97.1%
3206409 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 46.0 4.51e-01 92.7% 80.6%
5053352 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 48.0 4.77e-01 92.0% 98.1%
4941691 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.56 48.0 4.78e-01 94.0% 89.6%
5080532 2008.4.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like 0.56 39.0 4.55e-01 92.7% 100.0%
4032115 2008.1.1.102 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 0.56 42.0 4.63e-01 86.7% 97.5%
4975459 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 48.0 4.82e-01 92.7% 92.3%
5078940 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 44.0 4.38e-01 92.7% 80.6%
4488209 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 40.0 4.45e-01 93.3% 94.1%
5057728 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 43.0 4.69e-01 92.7% 100.0%
4933915 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.55 47.0 4.68e-01 94.7% 87.5%
4945329 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.54 49.0 4.28e-01 95.3% 67.0%
5074234 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 48.0 4.06e-01 96.0% 74.8%
4998336 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.54 48.0 4.87e-01 94.7% 97.2%
5073133 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.54 49.0 4.92e-01 96.7% 96.7%
5077023 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.54 46.0 4.45e-01 92.0% 92.1%
5064957 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 47.0 4.72e-01 94.0% 94.7%
4930910 2008.1.1.219 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 0.53 39.0 4.21e-01 89.3% 89.6%
4959556 2008.1.1.219 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 0.53 38.0 4.25e-01 87.3% 94.8%
5076295 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.53 45.0 4.73e-01 92.7% 100.0%
4946707 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 38.0 4.29e-01 86.7% 96.5%
3743726 327.5.1.7 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › Mug62 0.53 39.0 3.96e-01 76.0% 100.0%
3222276 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.53 40.0 3.92e-01 99.3% 71.8%
4929290 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 41.0 4.47e-01 92.7% 100.0%
3219028 7558.1.1.11 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C 0.52 46.0 3.58e-01 97.3% 56.7%
2600735 7581.1.1.13 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ACP_syn_III 0.52 34.0 3.18e-01 96.7% 52.2%
3222527 7558.1.1.11 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C 0.52 45.0 3.46e-01 96.7% 49.4%
3102571 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 44.0 4.56e-01 92.0% 97.9%
5044802 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 45.0 4.04e-01 95.3% 67.6%
3570814 7558.1.1.11 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase,Acyltransf_C 0.52 46.0 3.49e-01 98.0% 48.9%
5041629 2008.1.1.219 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF790 0.52 36.0 4.10e-01 82.7% 96.4%
3259164 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 41.0 3.84e-01 97.3% 69.2%
3506091 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 41.0 3.86e-01 97.3% 70.3%
4927057 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 40.0 4.24e-01 89.3% 96.9%
4457766 2008.1.1.201 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_CfrBI 0.50 43.0 3.30e-01 93.3% 40.3%
4927077 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 43.0 3.80e-01 90.7% 75.7%
D2 medium residues 1-59_211-235
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3syyA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.83 66.0 4.82e-01 82.1% 95.9%
5wtpA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.60 44.0 3.93e-01 79.8% 66.1%
4b6iA00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 39.0 3.70e-01 70.2% 93.0%
3eccA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 3.37e-01 82.1% 85.2%
3ndzA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 42.0 2.88e-01 88.1% 51.6%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 36.0 3.61e-01 86.9% 70.6%
3hl6A02 1.20.58.700 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 41.0 3.75e-01 95.2% 65.2%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 40.0 3.54e-01 88.1% 63.8%
2fd5A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 42.0 3.75e-01 98.8% 100.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287135 6164.1.1.2 alpha bundles › Bestrophin › Bestrophin › Bestrophin › DUF4239 0.57 43.0 3.10e-01 81.0% 76.8%
4934242 4033.1.1.1 alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.52 43.0 3.62e-01 90.5% 89.7%