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OP172819.1__WAX17136.1__PF672P1_00078__00078

Bact-Vir

OP172819.1__WAX17136.1__PF672P1_00078__00078

Identity

Accession:
OP172819 ↗
Kingdom:
phage

Quality

94.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-90_226-241
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00145.24 best DNA_methylase 85.8 5.60e-24 99.1% 25.6%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c7rA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.92 77.0 5.85e-01 100.0% 42.7%
6fdfA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.87 64.0 5.07e-01 100.0% 41.0%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.84 61.0 4.85e-01 100.0% 39.5%
3pt9A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.83 80.0 5.52e-01 100.0% 48.7%
4h0nA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.82 63.0 5.02e-01 98.1% 42.6%
4ft4A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.82 78.0 5.17e-01 100.0% 37.9%
3me5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.77 73.0 5.36e-01 100.0% 47.6%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.76 71.0 4.96e-01 98.1% 39.5%
1ok8A03 3.30.387.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 0.57 39.0 4.31e-01 100.0% 90.1%
1emsA02 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.56 38.0 3.55e-01 100.0% 56.2%
3khkA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 3.33e-01 100.0% 31.9%
2p0lA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 46.0 3.54e-01 100.0% 86.5%
3l7xA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.53 38.0 3.38e-01 76.2% 50.3%
3fefA00 3.90.1820.10 Alpha Beta › Alpha-Beta Complex › LDH C-terminal domain-like › AglA-like glucosidase 0.51 45.0 3.03e-01 100.0% 59.2%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3342198 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.84 80.0 5.07e-01 100.0% 64.9%
None 0.83 80.0 4.70e-01 100.0% 49.2%
3848644 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.83 80.0 4.92e-01 100.0% 66.4%
3908230 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.83 79.0 4.67e-01 100.0% 48.5%
3295997 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.82 78.0 4.91e-01 100.0% 67.6%
3465494 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.82 78.0 4.83e-01 100.0% 62.6%
4222649 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.81 78.0 5.05e-01 100.0% 64.2%
5004974 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 76.0 5.02e-01 98.1% 67.1%
4876952 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 66.0 4.96e-01 84.8% 44.8%
4322300 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 76.0 4.99e-01 100.0% 55.8%
4588619 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 76.0 4.86e-01 100.0% 73.2%
4931668 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 76.0 4.95e-01 100.0% 68.2%
3965427 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 76.0 5.01e-01 100.0% 58.9%
4611387 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 76.0 5.03e-01 100.0% 61.1%
4319916 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.80 76.0 5.14e-01 100.0% 66.0%
4932783 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.79 76.0 5.14e-01 100.0% 64.9%
4014988 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.79 75.0 4.65e-01 100.0% 53.2%
4416759 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.79 76.0 5.08e-01 100.0% 56.2%
4628792 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.79 75.0 4.79e-01 100.0% 62.4%
3631753 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.79 75.0 4.80e-01 100.0% 62.6%
4927198 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.79 75.0 4.98e-01 100.0% 64.2%
3184404 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.79 75.0 4.78e-01 100.0% 67.1%
4120068 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.79 75.0 4.97e-01 100.0% 67.5%
4303907 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.78 75.0 4.85e-01 100.0% 65.8%
3206673 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.78 74.0 4.93e-01 100.0% 53.5%
5082222 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.78 74.0 5.27e-01 100.0% 61.5%
5029977 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.78 75.0 5.06e-01 100.0% 61.8%
4585623 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.78 74.0 4.94e-01 100.0% 63.7%
3686224 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.77 73.0 4.94e-01 100.0% 54.3%
4522824 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.77 73.0 4.84e-01 100.0% 58.3%
3282271 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.77 73.0 4.92e-01 100.0% 53.2%
None 0.76 73.0 4.91e-01 100.0% 63.4%
4342862 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 73.0 5.44e-01 100.0% 51.7%
5045598 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 62.0 4.01e-01 84.8% 22.3%
5021818 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 72.0 4.69e-01 100.0% 58.7%
4238737 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 73.0 4.82e-01 100.0% 54.2%
3437851 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 55.0 4.36e-01 79.0% 40.0%
3590578 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 73.0 4.89e-01 100.0% 66.9%
4464495 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 72.0 4.81e-01 100.0% 64.4%
154255 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 71.0 4.64e-01 98.1% 53.9%
4664407 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 62.0 4.66e-01 84.8% 41.3%
4533950 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 72.0 4.81e-01 100.0% 67.0%
5030356 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 73.0 4.83e-01 100.0% 67.7%
4441830 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 73.0 4.83e-01 100.0% 67.0%
4624378 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 72.0 4.89e-01 100.0% 62.2%
3839088 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.75 72.0 4.75e-01 100.0% 66.5%
4969718 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.75 61.0 4.55e-01 85.7% 100.0%
3918690 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.73 68.0 4.56e-01 98.1% 67.4%
3737372 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.73 69.0 4.71e-01 100.0% 63.6%
3804871 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.73 68.0 4.55e-01 100.0% 68.9%
5004615 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.73 70.0 5.19e-01 100.0% 49.1%
4019470 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.72 69.0 4.64e-01 100.0% 37.4%
3276341 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.72 67.0 4.54e-01 100.0% 64.2%
None 0.72 67.0 4.57e-01 100.0% 69.3%
3492137 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.72 60.0 4.12e-01 87.6% 65.4%
3638384 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.72 68.0 4.28e-01 100.0% 58.1%
3206889 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.72 68.0 4.75e-01 100.0% 51.9%
3693759 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.71 67.0 4.23e-01 100.0% 57.1%
3620163 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.70 65.0 4.41e-01 99.0% 64.7%
4444495 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.68 63.0 4.24e-01 98.1% 66.6%
5082603 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.68 50.0 3.62e-01 75.2% 36.2%
3838329 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.68 63.0 4.20e-01 100.0% 63.5%
149260 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.67 63.0 4.33e-01 100.0% 62.2%
4029172 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.66 62.0 4.12e-01 100.0% 59.4%
4586575 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.65 61.0 4.16e-01 100.0% 64.2%
4952917 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.62 47.0 3.62e-01 79.0% 95.5%
3939734 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.59 36.0 3.73e-01 81.9% 63.0%
4032112 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.57 43.0 3.16e-01 78.1% 38.5%
4378054 7587.1.1.0 a/b three-layered sandwiches › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases › Rossmann-like domain in carbohydrate phosphatases 0.57 35.0 3.34e-01 93.3% 51.2%
4943280 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.53 38.0 3.70e-01 76.2% 67.0%
3193779 312.1.1.11 a+b three layers › HIT-like › HIT-related › HIT-related › Ap4A_phos_N 0.52 36.0 3.16e-01 100.0% 47.7%
4968627 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.50 42.0 3.94e-01 91.4% 88.5%
D2 high residues 94-223
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00145.24 best DNA_methylase 33.5 4.50e-08 100.0% 36.7%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qv2A02 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.76 64.0 6.64e-01 100.0% 93.3%
3ptaA01 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.71 51.0 5.01e-01 92.3% 69.1%
1g55A01 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.71 64.0 6.45e-01 100.0% 93.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4598672 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.81 72.0 5.14e-01 100.0% 35.8%
3611239 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.77 66.0 4.58e-01 100.0% 30.9%
149260 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.76 64.0 4.58e-01 100.0% 35.0%
1308542 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.71 60.0 4.20e-01 100.0% 31.7%
3620163 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.70 65.0 4.59e-01 100.0% 36.2%
4029172 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.69 56.0 3.93e-01 100.0% 30.0%
5038618 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.68 42.0 3.16e-01 99.2% 27.1%
3498742 2003.1.5.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase 0.67 63.0 4.42e-01 100.0% 34.8%