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OP172834.1__WAX17875.1__PM708P3_00017__00017

Bact-Vir

OP172834.1__WAX17875.1__PM708P3_00017__00017

Identity

Accession:
OP172834 ↗
Kingdom:
phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Parabacteroides_phage_PM708P3

TaxID: 2968704

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 140-259
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 29.0 3.55e-01 95.8% 67.1%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 28.0 3.34e-01 95.0% 61.8%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 33.0 4.11e-01 92.5% 100.0%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 35.0 3.93e-01 95.0% 80.9%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 24.0 3.21e-01 76.7% 74.6%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 28.0 3.13e-01 95.0% 60.9%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 25.0 3.22e-01 77.5% 80.7%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 24.0 3.18e-01 76.7% 80.0%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 47.0 4.76e-01 100.0% 98.3%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 23.0 2.92e-01 89.2% 66.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 27.0 3.37e-01 81.7% 83.1%
2i0nA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 25.0 3.20e-01 79.2% 82.5%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 4.20e-01 98.3% 96.7%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 24.0 3.11e-01 93.3% 80.0%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 25.0 3.30e-01 79.2% 89.5%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 3.93e-01 98.3% 91.4%
3aabB00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 29.0 3.09e-01 95.0% 64.2%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.74e-01 77.5% 96.7%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 29.0 3.56e-01 94.2% 90.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4589583 2008.1.1.191 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.64 44.0 3.86e-01 85.8% 49.1%
3289164 295.1.1.25 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF397 0.62 52.0 5.40e-01 100.0% 100.0%
3028388 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.57 27.0 3.38e-01 92.5% 72.2%
3516244 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 24.0 2.88e-01 99.2% 57.5%
5047010 2008.1.1.63 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI 0.57 39.0 3.17e-01 85.0% 37.8%
3899829 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 25.0 3.05e-01 80.0% 61.3%
4033928 241.9.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.56 36.0 3.58e-01 89.2% 61.6%
3737825 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.56 24.0 3.32e-01 79.2% 81.8%
3886646 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 24.0 3.07e-01 77.5% 67.7%
4104114 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 24.0 3.05e-01 77.5% 66.2%
3924337 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 25.0 3.38e-01 94.2% 83.3%
4133335 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 24.0 3.10e-01 77.5% 71.7%
3542245 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 25.0 3.03e-01 77.5% 65.7%
3575263 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 24.0 3.10e-01 80.0% 70.8%
3933965 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 24.0 3.15e-01 79.2% 77.6%
3217112 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 24.0 2.99e-01 77.5% 65.7%
3898363 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 25.0 3.00e-01 77.5% 65.7%
5061905 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.53 28.0 3.38e-01 86.7% 76.2%
3719452 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 24.0 2.94e-01 76.7% 64.3%
3899851 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 24.0 3.05e-01 77.5% 69.2%
3399284 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 24.0 3.06e-01 80.0% 70.8%
3217113 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 24.0 3.04e-01 80.0% 70.8%
3906249 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 24.0 2.89e-01 77.5% 61.3%
3539147 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 25.0 3.00e-01 77.5% 67.1%
4483819 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 24.0 2.96e-01 79.2% 65.7%
3510576 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.52 28.0 3.34e-01 87.5% 76.2%
3920767 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.86e-01 95.8% 84.0%
3914346 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 23.0 2.63e-01 77.5% 48.9%
3748846 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 24.0 2.96e-01 77.5% 69.2%
3263489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 24.0 3.08e-01 91.7% 75.4%
4014374 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 31.0 3.49e-01 98.3% 81.2%
3214149 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 24.0 3.02e-01 76.7% 72.3%
5027198 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.52 31.0 3.20e-01 100.0% 61.8%
3403199 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.51 31.0 3.24e-01 98.3% 63.6%
3522947 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 24.0 2.92e-01 79.2% 69.2%
3267416 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 24.0 2.80e-01 79.2% 58.7%
3569639 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 24.0 2.79e-01 77.5% 56.2%
3876823 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.51 24.0 2.81e-01 79.2% 60.0%
5079975 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 32.0 3.04e-01 85.8% 51.0%
2770566 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.51 34.0 3.72e-01 94.2% 87.1%
4610859 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 23.0 2.92e-01 91.7% 73.8%
D2 medium residues 1-93
PDB