Back to structures

OP172835.1__WAX17928.1__PM708P4_00021__00021

Bact-Vir

OP172835.1__WAX17928.1__PM708P4_00021__00021

Identity

Accession:
OP172835 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-79
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.75 67.0 5.49e-01 100.0% 91.9%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.71 64.0 5.16e-01 100.0% 83.8%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 47.0 4.94e-01 70.3% 75.0%
6fnuA00 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.70 43.0 2.85e-01 71.6% 15.5%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.69 47.0 4.49e-01 70.3% 61.2%
1dtoA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.69 54.0 4.83e-01 83.8% 68.6%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 52.0 4.83e-01 86.5% 70.3%
5fmnA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.63 49.0 4.66e-01 82.4% 100.0%
2rkkA01 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.63 50.0 3.91e-01 91.9% 40.4%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.63 54.0 4.45e-01 94.6% 86.5%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 48.0 3.89e-01 83.8% 43.9%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.62 42.0 3.98e-01 74.3% 57.8%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.62 55.0 4.60e-01 100.0% 67.2%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.62 48.0 4.51e-01 82.4% 96.7%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.61 54.0 4.05e-01 98.6% 58.6%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.60 54.0 4.24e-01 100.0% 66.2%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.59 49.0 4.49e-01 90.5% 70.1%
4ptsB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 54.0 4.02e-01 100.0% 54.8%
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 44.0 3.40e-01 87.8% 34.9%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.58 50.0 4.38e-01 100.0% 81.7%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.58 49.0 4.26e-01 100.0% 93.5%
1h5zA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 49.0 3.08e-01 97.3% 72.6%
1wixA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.57 50.0 4.02e-01 100.0% 53.6%
1a5kC02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.57 42.0 2.69e-01 79.7% 40.7%
5bz1A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.56 50.0 3.20e-01 100.0% 32.9%
1b8bA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.56 43.0 2.62e-01 83.8% 13.9%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.56 50.0 4.16e-01 100.0% 82.4%
6xkyA01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.56 47.0 3.65e-01 100.0% 63.1%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 47.0 3.60e-01 95.9% 61.1%
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 48.0 4.13e-01 100.0% 79.2%
2b1eA02 1.20.1310.30 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › 0.55 45.0 3.59e-01 89.2% 63.6%
3tu3B03 1.20.1050.100 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 45.0 3.46e-01 90.5% 53.5%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 45.0 4.09e-01 91.9% 96.0%
2yinA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.54 44.0 3.69e-01 90.5% 82.8%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.62e-01 97.3% 78.6%
5domA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.52 38.0 3.63e-01 78.4% 84.4%
4bthA00 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.52 38.0 2.92e-01 75.7% 81.7%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 4.06e-01 94.6% 74.3%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.52 37.0 3.51e-01 100.0% 61.5%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 46.0 2.92e-01 100.0% 21.9%
3ppuB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 43.0 3.83e-01 97.3% 90.3%
1rc2A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.50 43.0 3.08e-01 94.6% 81.4%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3515231 633.7.1.0 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.75 49.0 3.83e-01 70.3% 33.3%
3188064 605.1.1.133 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › OST3_OST6 0.74 56.0 4.62e-01 79.7% 49.6%
3912101 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.72 49.0 4.41e-01 70.3% 58.0%
4950924 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.72 64.0 5.14e-01 100.0% 89.0%
5064674 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.71 62.0 5.21e-01 95.9% 94.4%
5079046 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.71 64.0 5.25e-01 100.0% 91.8%
4994061 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.71 64.0 5.11e-01 100.0% 90.2%
146673 3017.1.1.1 alpha bundles › Alpha-helical subdomain in E2 regularoty transactivation domain › Alpha-helical subdomain in E2 regularoty transactivation domain › Alpha-helical subdomain in E2 regularoty transactivation domain › PPV_E2_N 0.70 55.0 5.00e-01 83.8% 71.1%
4926879 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.70 58.0 4.56e-01 90.5% 89.3%
5029691 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.69 63.0 5.12e-01 100.0% 93.3%
4967177 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.69 63.0 5.12e-01 100.0% 92.6%
3815546 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.69 50.0 3.87e-01 75.7% 43.2%
5049509 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.69 62.0 5.01e-01 100.0% 89.3%
2168148 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.69 61.0 5.06e-01 100.0% 97.0%
5052139 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.69 62.0 5.01e-01 100.0% 94.2%
4949399 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.69 62.0 4.95e-01 100.0% 86.2%
4032006 601.7.1.1 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.68 59.0 4.92e-01 100.0% 97.0%
5031425 601.7.1.3 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › PaREP1 0.68 60.0 5.00e-01 100.0% 90.0%
5081174 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 59.0 4.93e-01 100.0% 97.7%
3249530 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.66 58.0 4.79e-01 98.6% 97.0%
4993505 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.65 56.0 4.85e-01 98.6% 100.0%
3514283 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 46.0 3.61e-01 74.3% 47.7%
4980072 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 54.0 4.15e-01 90.5% 62.0%
3520863 109.4.1.472 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like 0.64 51.0 3.29e-01 86.5% 32.2%
4017895 109.4.1.149 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_N,COG5_C 0.60 49.0 3.14e-01 90.5% 37.1%
3631582 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.60 54.0 4.80e-01 95.9% 80.0%
4117096 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.59 51.0 3.90e-01 100.0% 58.9%
5030255 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.59 53.0 3.49e-01 100.0% 55.2%
3258984 601.25.1.1 alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.59 51.0 4.04e-01 100.0% 66.7%
4364111 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 4.10e-01 91.9% 58.4%
4322883 601.13.1.11 alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FlaF 0.58 49.0 4.55e-01 97.3% 96.0%
4613289 109.4.1.1301 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RAI16-like, KELAA, DUF5917 0.58 50.0 2.90e-01 95.9% 11.0%
3692512 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.58 52.0 4.26e-01 95.9% 54.6%
143208 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.58 48.0 4.07e-01 90.5% 79.0%
3217232 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 4.45e-01 100.0% 78.8%
3719524 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.58 49.0 4.14e-01 97.3% 70.8%
4972154 604.12.1.135 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 0.57 47.0 4.31e-01 91.9% 67.0%
4999868 604.1.1.264 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Oxidored_q2 0.57 47.0 4.44e-01 90.5% 76.7%
3618833 2484.8.1.0 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.57 50.0 3.47e-01 95.9% 74.2%
3611089 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 50.0 4.18e-01 97.3% 92.0%
3444355 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.56 47.0 3.87e-01 97.3% 93.3%
3927597 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.56 49.0 4.16e-01 95.9% 75.0%
4483871 601.7.1.6 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.56 49.0 3.97e-01 100.0% 96.0%
5007487 164.1.1.33 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › DUF2391 0.56 41.0 3.50e-01 78.4% 78.2%
5027312 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.56 50.0 4.44e-01 95.9% 82.5%
3820045 603.1.1.118 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.56 47.0 4.52e-01 95.9% 81.2%
3799175 109.4.1.1373 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Syndetin_C, Vps54_N 0.55 49.0 2.83e-01 98.6% 11.2%
3457607 3660.1.1.0 alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG 0.55 48.0 3.82e-01 100.0% 81.9%
3932846 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.55 46.0 3.42e-01 97.3% 85.9%
4646553 109.4.1.1694 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28753, PF28771 0.55 48.0 3.36e-01 100.0% 57.6%
3481110 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 47.0 4.33e-01 95.9% 82.1%
None 0.54 46.0 3.27e-01 95.9% 44.3%
3289317 191.1.1.41 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › EthR_C 0.54 46.0 3.75e-01 97.3% 82.0%
4962299 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.54 49.0 3.83e-01 100.0% 50.3%
3764996 11.2.1.77 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › FerA 0.52 44.0 3.86e-01 100.0% 97.5%
3887920 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 42.0 3.37e-01 93.2% 62.6%
3291425 191.1.1.44 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_43 0.51 42.0 3.73e-01 98.6% 81.7%