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OP172835.1__WAX17944.1__PM708P4_00037__00037

Bact-Vir

OP172835.1__WAX17944.1__PM708P4_00037__00037

Identity

Accession:
OP172835 ↗
Kingdom:
phage

Quality

94.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-54
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xaxB02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.78 68.0 5.43e-01 98.0% 96.0%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.77 57.0 6.20e-01 96.1% 100.0%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.76 65.0 5.18e-01 100.0% 55.6%
2w7nA00 1.10.10.2690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.76 52.0 4.26e-01 96.1% 39.4%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 5.12e-01 100.0% 64.7%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 5.05e-01 100.0% 62.0%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.71 59.0 4.91e-01 96.1% 70.2%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.70 64.0 5.01e-01 100.0% 69.3%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 55.0 5.30e-01 100.0% 78.3%
6adqG01 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.70 49.0 3.36e-01 74.5% 21.9%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 52.0 5.31e-01 100.0% 91.5%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 53.0 4.98e-01 98.0% 68.7%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.54e-01 96.1% 63.3%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 45.0 4.18e-01 94.1% 55.4%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.66 46.0 4.03e-01 74.5% 50.6%
1d3yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.11e-01 100.0% 77.5%
1fc3B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 4.44e-01 96.1% 68.3%
2ebiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 54.0 5.10e-01 100.0% 81.8%
3lmmC04 1.10.10.2340 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 50.0 4.15e-01 100.0% 48.3%
1y7oB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.65 57.0 3.87e-01 98.0% 39.9%
2a0bA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.65 57.0 4.36e-01 100.0% 61.9%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.63e-01 100.0% 69.7%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 5.09e-01 98.0% 94.6%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.64 44.0 4.18e-01 74.5% 60.7%
1r4aE00 1.10.220.60 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain 0.63 41.0 4.16e-01 70.6% 66.7%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.62 50.0 4.25e-01 92.2% 96.6%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 52.0 3.95e-01 100.0% 72.9%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.02e-01 96.1% 53.3%
2wauA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.62 51.0 3.77e-01 100.0% 56.8%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.61 49.0 3.81e-01 94.1% 39.7%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 53.0 4.81e-01 100.0% 79.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.61 52.0 4.50e-01 100.0% 67.4%
2ef8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 47.0 4.09e-01 88.2% 83.3%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.60 51.0 3.42e-01 100.0% 35.2%
1tuoA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.60 47.0 3.63e-01 86.3% 82.9%
3vw7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 47.0 2.97e-01 88.2% 52.8%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.59 48.0 4.16e-01 96.1% 81.8%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 48.0 4.92e-01 96.1% 95.9%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 47.0 3.65e-01 100.0% 37.9%
4y0bA00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.58 40.0 2.96e-01 72.5% 66.4%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.57 46.0 3.91e-01 100.0% 84.0%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 50.0 4.62e-01 100.0% 87.9%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.56 47.0 4.28e-01 94.1% 69.6%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.56 39.0 3.50e-01 74.5% 93.2%
1axdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 45.0 3.51e-01 96.1% 83.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 44.0 4.14e-01 98.0% 71.6%
1z7mC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 46.0 2.89e-01 98.0% 89.1%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.55 42.0 2.89e-01 86.3% 39.1%
2ktaA01 6.10.140.530 Special › Helix non-globular › Helix Hairpins › 0.55 46.0 4.51e-01 100.0% 96.5%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.54 47.0 4.58e-01 100.0% 89.5%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 4.12e-01 94.1% 88.9%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.52 41.0 4.11e-01 96.1% 86.3%
6t0bc02 1.20.120.80 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle 0.52 40.0 2.88e-01 94.1% 87.4%
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.52 41.0 3.77e-01 100.0% 68.4%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4093017 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.78 64.0 5.75e-01 100.0% 64.0%
3958582 101.1.1.282 alpha arrays › HTH › HTH › Three-helical HTH › DUF222 0.78 70.0 4.95e-01 100.0% 37.3%
3951854 103.12.1.1 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.74 52.0 4.94e-01 82.4% 63.3%
3606717 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 60.0 6.09e-01 98.0% 96.0%
3266463 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 6.12e-01 100.0% 89.1%
4251816 4973.1.1.1 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind 0.73 55.0 5.22e-01 94.1% 67.7%
4325357 4973.1.1.0 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.73 59.0 5.43e-01 94.1% 68.6%
3325325 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 61.0 5.39e-01 100.0% 70.0%
3963136 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.73 64.0 4.68e-01 100.0% 40.7%
3730715 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 56.0 5.53e-01 98.0% 83.6%
5025032 101.1.1.542 alpha arrays › HTH › HTH › Three-helical HTH › DUF790 0.72 59.0 5.97e-01 94.1% 90.0%
4289864 601.25.1.0 alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain 0.72 50.0 3.59e-01 74.5% 25.3%
3272819 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.71 57.0 4.64e-01 100.0% 44.5%
4369740 132.3.1.0 alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ 0.71 54.0 4.99e-01 96.1% 64.6%
3904086 101.1.1.112 alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.71 61.0 5.13e-01 100.0% 100.0%
3963650 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 54.0 5.47e-01 96.1% 92.0%
3410130 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 60.0 5.77e-01 100.0% 85.0%
4193935 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.69 47.0 4.02e-01 74.5% 43.5%
5036595 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.69 59.0 5.79e-01 96.1% 89.1%
4185536 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.69 59.0 3.42e-01 100.0% 14.2%
5003639 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.68 57.0 4.16e-01 100.0% 33.5%
4992012 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 59.0 5.61e-01 96.1% 85.0%
3960509 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.67 55.0 5.14e-01 100.0% 73.8%
4928737 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.67 56.0 4.73e-01 100.0% 68.4%
3711858 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 57.0 4.38e-01 100.0% 43.2%
4395930 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.67 55.0 3.65e-01 100.0% 29.2%
4933155 198.1.1.27 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.66 54.0 4.76e-01 100.0% 61.2%
2796737 3009.1.1.0 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.65 54.0 5.18e-01 100.0% 80.6%
3909225 101.1.10.7 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.64 51.0 4.20e-01 100.0% 86.4%
4180031 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.63 50.0 5.09e-01 100.0% 100.0%
3654794 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.63 44.0 2.51e-01 74.5% 65.0%
4507511 2006.1.3.6 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.62 52.0 3.58e-01 96.1% 48.9%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 50.0 4.26e-01 100.0% 92.0%
3524925 108.1.1.86 alpha arrays › EF-hand › EF-hand-related › EF-hand › CAC1F_C 0.62 48.0 4.74e-01 86.3% 85.5%
167148 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 47.0 4.09e-01 88.2% 83.3%
3402084 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 4.45e-01 98.0% 91.8%
3938380 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.61 50.0 4.44e-01 94.1% 69.3%
4145773 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.60 49.0 4.86e-01 100.0% 92.7%
4029664 108.1.1.12 alpha arrays › EF-hand › EF-hand-related › EF-hand › p25-alpha 0.60 50.0 4.13e-01 94.1% 56.8%
4992091 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.60 51.0 2.96e-01 96.1% 10.3%
3396254 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 48.0 4.00e-01 92.2% 53.7%
3655450 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.59 41.0 2.40e-01 72.5% 99.8%
4474310 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.59 49.0 4.25e-01 94.1% 76.2%
4019857 316.1.1.63 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF7582 0.57 48.0 3.34e-01 98.0% 51.6%
4095914 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.56 49.0 4.25e-01 100.0% 71.2%
3892460 548.1.1.1 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.54 41.0 3.96e-01 86.3% 73.3%
3590053 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.54 40.0 3.52e-01 86.3% 67.1%