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OP172835.1__WAX17955.1__PM708P4_00048__00048
Bact-VirOP172835.1__WAX17955.1__PM708P4_00048__00048
Identity
- Accession:
- OP172835 ↗
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-49
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yu1A02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 63.0 | 4.84e-01 | 100.0% | 82.1% |
| 4dq5B00 | 1.10.530.50 | Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 | 0.67 | 55.0 | 3.81e-01 | 100.0% | 27.5% |
| 3aawC01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.66 | 51.0 | 3.31e-01 | 85.1% | 90.3% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 43.0 | 3.24e-01 | 74.5% | 28.3% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.63 | 47.0 | 3.89e-01 | 89.4% | 43.8% |
| 2w00A02 | 3.90.640.50 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.61 | 51.0 | 4.48e-01 | 97.9% | 98.6% |
| 7z8iC01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.60 | 49.0 | 4.19e-01 | 95.7% | 64.2% |
| 4dsfA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 46.0 | 3.59e-01 | 89.4% | 41.8% |
| 4z7fB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.57 | 46.0 | 3.23e-01 | 93.6% | 49.4% |
| 3c1oA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.57 | 35.0 | 2.63e-01 | 72.3% | 22.5% |
| 3do9A01 | 3.40.1530.30 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Uncharacterised family UPF0302, N-terminal domain | 0.57 | 44.0 | 3.38e-01 | 89.4% | 89.2% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.56 | 43.0 | 3.28e-01 | 89.4% | 80.2% |
| 2ja2A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.55 | 47.0 | 4.60e-01 | 97.9% | 88.5% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.55 | 42.0 | 4.15e-01 | 85.1% | 92.0% |
| 3kfvA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 3.01e-01 | 85.1% | 88.7% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 43.0 | 3.59e-01 | 93.6% | 52.9% |
| 8agyA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 45.0 | 2.85e-01 | 95.7% | 67.6% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.51 | 37.0 | 3.62e-01 | 87.2% | 73.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3606823 | 3476.1.1.0 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain | 0.76 | 47.0 | 4.35e-01 | 76.6% | 50.0% |
| 3581355 | 7512.1.1.18 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn | 0.76 | 66.0 | 4.42e-01 | 97.9% | 38.9% |
| 3981239 | 1049.2.1.3 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 | 0.67 | 50.0 | 3.98e-01 | 80.9% | 40.0% |
| 3704855 | 2003.1.9.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_4HB | 0.65 | 52.0 | 3.28e-01 | 89.4% | 17.2% |
| 4959470 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.63 | 47.0 | 3.51e-01 | 80.9% | 45.8% |
| 4889798 | 2003.1.9.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF, E1_4HB | 0.63 | 52.0 | 3.17e-01 | 89.4% | 15.1% |
| 3375525 | 148.1.1.10 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TAFII28 | 0.63 | 47.0 | 3.65e-01 | 89.4% | 35.5% |
| 5079689 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 46.0 | 4.02e-01 | 78.7% | 87.1% |
| 3270407 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.62 | 52.0 | 3.12e-01 | 93.6% | 13.7% |
| 3738109 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.61 | 44.0 | 3.47e-01 | 89.4% | 37.9% |
| 4962468 | 101.1.2.925 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7344 | 0.57 | 44.0 | 3.48e-01 | 87.2% | 39.0% |
| 3927575 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.53 | 41.0 | 3.91e-01 | 93.6% | 76.7% |
| 4946290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.72e-01 | 87.2% | 63.1% |
| 3954313 | 150.5.1.52 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE | 0.52 | 41.0 | 3.22e-01 | 87.2% | 42.1% |
D2
medium
residues 59-94
Domain cluster:
representative