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OP172837.1__WAX18037.1__SG586P3_00032__00032

Bact-Vir

OP172837.1__WAX18037.1__SG586P3_00032__00032

Identity

Accession:
OP172837 ↗
Kingdom:
phage

Quality

94.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.70 49.0 4.46e-01 100.0% 54.9%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.68 59.0 4.73e-01 100.0% 97.2%
3blnA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 50.0 3.60e-01 80.8% 59.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.66 49.0 4.11e-01 80.8% 96.7%
3gnlA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 46.0 3.24e-01 73.1% 84.8%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.65 47.0 3.99e-01 80.8% 94.7%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 51.0 3.67e-01 86.5% 86.2%
3fncB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 50.0 3.50e-01 84.6% 83.2%
1wv3A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.64 56.0 4.92e-01 98.1% 100.0%
5wfiA01 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.62 55.0 4.19e-01 100.0% 43.0%
2fsrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 49.0 3.41e-01 86.5% 76.6%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.60 45.0 4.58e-01 100.0% 88.0%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 40.0 3.32e-01 100.0% 37.9%
3lp8A04 3.90.600.10 Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › Phosphoribosylglycinamide synthetase, C-terminal domain 0.60 52.0 4.36e-01 100.0% 95.7%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 3.66e-01 86.5% 47.5%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.60 49.0 3.77e-01 100.0% 89.3%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 51.0 4.70e-01 100.0% 98.6%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.59 42.0 2.59e-01 75.0% 15.3%
6jkvA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 50.0 3.31e-01 98.1% 98.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.67e-01 84.6% 58.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 48.0 3.48e-01 100.0% 45.5%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 47.0 3.74e-01 100.0% 95.2%
2lfvA00 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.58 49.0 3.97e-01 100.0% 67.9%
2qmwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 42.0 3.53e-01 80.8% 95.7%
1i6uA01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.57 45.0 4.15e-01 88.5% 92.6%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 44.0 3.79e-01 100.0% 51.0%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 3.40e-01 71.2% 64.2%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 38.0 3.25e-01 100.0% 40.0%
3i7dA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 38.0 2.67e-01 100.0% 23.6%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.55 42.0 3.41e-01 82.7% 82.2%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 42.0 3.80e-01 86.5% 81.3%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.55 39.0 2.99e-01 78.8% 47.1%
2r7kA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 40.0 3.92e-01 100.0% 72.1%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.54 36.0 2.96e-01 88.5% 33.9%
4b09B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.48e-01 88.5% 75.5%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.53 47.0 3.49e-01 100.0% 98.5%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.53 44.0 3.47e-01 100.0% 91.7%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.74e-01 88.5% 65.3%
4tm5A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.53 45.0 3.41e-01 100.0% 97.0%
2w5eA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 3.45e-01 98.1% 60.0%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.52 45.0 3.25e-01 100.0% 49.7%
2q0oA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 45.0 3.19e-01 100.0% 56.0%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 43.0 3.62e-01 88.5% 85.7%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.16e-01 100.0% 50.7%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 44.0 3.53e-01 100.0% 56.5%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 3.58e-01 100.0% 50.0%
3b5iB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 2.56e-01 86.5% 31.4%
2jvrA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 39.0 3.50e-01 90.4% 87.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587556 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.76 65.0 5.95e-01 100.0% 85.7%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.70 49.0 4.50e-01 100.0% 56.5%
4028919 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.67 57.0 3.68e-01 100.0% 33.2%
3632428 211.1.1.24 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.67 52.0 3.94e-01 88.5% 45.9%
4960468 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.66 46.0 3.11e-01 75.0% 79.8%
4953730 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.65 51.0 3.43e-01 84.6% 88.9%
4947353 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.65 52.0 3.70e-01 86.5% 86.9%
5048876 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 44.0 4.13e-01 100.0% 60.0%
3254631 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.60 49.0 4.69e-01 98.1% 96.9%
3990697 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 52.0 4.30e-01 100.0% 96.8%
4991413 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.60 39.0 4.11e-01 100.0% 87.5%
3706810 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 49.0 3.83e-01 100.0% 92.3%
3803370 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 47.0 4.14e-01 88.5% 80.8%
3959682 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 45.0 3.99e-01 82.7% 82.7%
3367454 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.58 47.0 3.30e-01 90.4% 46.9%
3630093 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 50.0 4.51e-01 100.0% 70.7%
3627976 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 49.0 3.97e-01 100.0% 68.2%
3816857 223.1.1.84 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.58 44.0 2.71e-01 90.4% 48.6%
3650337 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.58 45.0 3.41e-01 86.5% 50.0%
3260247 4357.1.1.1 beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 47.0 4.17e-01 100.0% 88.0%
4941350 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 46.0 3.06e-01 90.4% 90.7%
3382396 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 45.0 3.88e-01 88.5% 82.4%
3308135 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 47.0 3.92e-01 90.4% 76.7%
3175293 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.57 47.0 3.72e-01 100.0% 79.2%
3333863 304.8.1.47 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR9_3rd 0.56 39.0 3.14e-01 90.4% 34.5%
3768911 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 49.0 4.31e-01 100.0% 92.5%
3655967 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 46.0 3.81e-01 90.4% 71.6%
3829402 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 46.0 4.05e-01 92.3% 86.3%
3643150 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 46.0 3.94e-01 92.3% 84.7%
3364258 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.56 46.0 3.90e-01 92.3% 81.8%
4431265 11.1.1.33 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin 0.56 43.0 3.18e-01 86.5% 93.1%
3704468 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 40.0 3.36e-01 84.6% 95.5%
3468691 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 45.0 3.85e-01 92.3% 83.1%
3661475 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 45.0 3.24e-01 92.3% 44.8%
3365684 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.55 45.0 3.71e-01 92.3% 75.0%
3907235 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.55 44.0 3.05e-01 100.0% 30.2%
3642698 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 41.0 4.02e-01 80.8% 89.1%
4335596 304.7.1.13 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Fervidolysin_NPro-like 0.55 39.0 3.50e-01 76.9% 90.7%
3267853 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.54 44.0 3.03e-01 98.1% 29.1%
3648085 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 47.0 4.05e-01 100.0% 88.2%
5017559 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.27e-01 98.1% 98.5%
3655963 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 43.0 3.96e-01 88.5% 78.6%
3622513 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 45.0 4.40e-01 100.0% 91.7%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 47.0 3.46e-01 100.0% 61.5%
3258276 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 43.0 2.99e-01 100.0% 30.7%
1566366 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.53 47.0 3.19e-01 100.0% 41.3%
3252861 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 44.0 3.04e-01 100.0% 30.7%
3962617 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 44.0 3.04e-01 98.1% 31.7%
4931464 822.3.1.0 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 0.53 44.0 4.01e-01 100.0% 73.3%
3864360 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.53 41.0 3.65e-01 90.4% 98.8%
3495764 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 43.0 3.09e-01 100.0% 36.8%
4633844 223.1.1.72 a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES2 0.52 46.0 2.96e-01 100.0% 27.7%
3875549 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.52 42.0 3.01e-01 100.0% 33.8%
3831039 109.4.1.1599 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.52 40.0 2.21e-01 82.7% 10.7%
3340161 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.52 45.0 3.10e-01 100.0% 42.2%
3603051 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.51 41.0 3.40e-01 100.0% 87.8%
2042105 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.51 44.0 2.99e-01 100.0% 38.7%
4871764 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.51 45.0 3.39e-01 100.0% 59.2%
4941685 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.51 41.0 3.81e-01 92.3% 92.9%
3942499 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 41.0 3.89e-01 100.0% 97.1%
3449952 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 40.0 3.39e-01 88.5% 77.8%
4996109 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 42.0 3.81e-01 98.1% 98.7%
5067811 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 38.0 2.70e-01 86.5% 58.4%
4360928 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.50 39.0 3.60e-01 88.5% 88.6%
3805842 304.112.1.3 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN 0.50 38.0 3.36e-01 88.5% 88.2%