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OP172839.1__WAX18097.1__WC29P1_00001__00001
Bact-VirOP172839.1__WAX18097.1__WC29P1_00001__00001
Identity
- Accession:
- OP172839 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-94
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01183.27 best | Glyco_hydro_25 | 39.1 | 1.40e-09 | 81.9% | 37.8% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h09A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.92 | 75.0 | 5.79e-01 | 89.4% | 42.8% |
| 1gkpA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.60 | 53.0 | 3.61e-01 | 97.9% | 69.0% |
| 3plnA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 40.0 | 3.42e-01 | 92.6% | 40.9% |
| 2h29A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 44.0 | 3.54e-01 | 80.9% | 46.3% |
| 4zeoH02 | 3.40.50.10470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 | 0.57 | 41.0 | 3.51e-01 | 85.1% | 45.0% |
| 1t57A00 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.57 | 47.0 | 3.89e-01 | 95.7% | 68.6% |
| 3n75A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 46.0 | 4.18e-01 | 98.9% | 65.9% |
| 4ymiB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 42.0 | 3.36e-01 | 80.9% | 47.0% |
| 1kcxA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 48.0 | 3.32e-01 | 100.0% | 70.8% |
| 1a5aB02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 3.64e-01 | 95.7% | 73.5% |
| 2qtfA01 | 3.40.50.11060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTPase HflX, N-terminal domain | 0.55 | 32.0 | 3.21e-01 | 88.3% | 53.6% |
| 4bucA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 36.0 | 3.66e-01 | 79.8% | 67.0% |
| 2ggsA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 46.0 | 3.61e-01 | 92.6% | 61.5% |
| 2gpyB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 3.23e-01 | 78.7% | 71.9% |
| 1ciaA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 45.0 | 3.57e-01 | 95.7% | 93.4% |
| 3ntvA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 41.0 | 3.25e-01 | 94.7% | 38.1% |
| 2zsjA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 4.16e-01 | 94.7% | 86.6% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 41.0 | 2.86e-01 | 94.7% | 25.2% |
| 3lwsA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 42.0 | 3.24e-01 | 94.7% | 59.8% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 4.07e-01 | 94.7% | 84.7% |
| 5ji5A00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.51 | 44.0 | 3.13e-01 | 96.8% | 43.9% |
| 2yk4A01 | 3.30.370.20 | Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › | 0.51 | 35.0 | 3.68e-01 | 76.6% | 79.3% |
| 4p63D00 | 3.40.910.10 | Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase | 0.51 | 43.0 | 3.08e-01 | 95.7% | 65.1% |
| 5nahA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 2.89e-01 | 92.6% | 59.3% |
| 4necC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 39.0 | 3.05e-01 | 83.0% | 84.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8882 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.91 | 76.0 | 5.85e-01 | 91.5% | 43.4% |
| 4996927 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.57 | 48.0 | 3.74e-01 | 95.7% | 70.2% |
| 4508524 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.57 | 50.0 | 3.54e-01 | 96.8% | 31.5% |
| 145356 | 4126.1.1.1 ↗ | a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA | 0.57 | 46.0 | 3.53e-01 | 89.4% | 75.2% |
| 4484929 | 323.1.1.23 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › LuxE | 0.57 | 46.0 | 3.17e-01 | 89.4% | 28.8% |
| 4998635 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.56 | 46.0 | 4.15e-01 | 95.7% | 65.4% |
| 4979796 | 7518.1.1.0 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like | 0.56 | 47.0 | 3.70e-01 | 96.8% | 63.3% |
| 4595305 | 2003.1.5.35 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM | 0.55 | 47.0 | 3.33e-01 | 95.7% | 30.1% |
| 3187913 | 7501.1.1.1 ↗ | a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 | 0.55 | 45.0 | 3.51e-01 | 100.0% | 39.4% |
| 3056597 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.53 | 44.0 | 4.06e-01 | 96.8% | 70.6% |
| 3346061 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 44.0 | 3.09e-01 | 93.6% | 60.0% |
| 3461536 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 42.0 | 3.06e-01 | 93.6% | 58.0% |
| 3728741 | 2003.1.7.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B | 0.50 | 41.0 | 3.10e-01 | 89.4% | 49.1% |
D2
high
residues 104-178
Domain cluster:
rep: LR596903.1__VUE37406.1__X__00018__D159-209
D3
high
residues 185-283
Domain cluster:
rep: KU981050.1__ANU78869.1__X__00026__D198-310
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.78 | 40.0 | 5.11e-01 | 100.0% | 86.0% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.77 | 33.0 | 4.28e-01 | 100.0% | 69.5% |
| 1udlA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 39.0 | 3.95e-01 | 100.0% | 51.0% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 32.0 | 4.03e-01 | 100.0% | 66.7% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.74 | 35.0 | 4.87e-01 | 100.0% | 95.7% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.72 | 34.0 | 4.26e-01 | 100.0% | 73.3% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 32.0 | 3.91e-01 | 100.0% | 64.1% |
| 2krsA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 41.0 | 5.04e-01 | 99.0% | 93.3% |
| 2rdgA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 39.0 | 4.46e-01 | 93.9% | 88.7% |
| 1ixrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 36.0 | 4.23e-01 | 87.9% | 95.2% |
| 2k52A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 37.0 | 4.02e-01 | 88.9% | 87.8% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 27.0 | 3.28e-01 | 99.0% | 72.3% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.52 | 23.0 | 2.72e-01 | 100.0% | 56.9% |
| 4glaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 38.0 | 3.94e-01 | 89.9% | 88.8% |
| 4omfB02 | 3.10.450.750 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 25.0 | 3.21e-01 | 98.0% | 91.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3519861 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 38.0 | 4.82e-01 | 100.0% | 76.7% |
| 4056584 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.78 | 40.0 | 4.42e-01 | 100.0% | 61.3% |
| 3561462 | 148.1.3.384 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › SH3_2 | 0.78 | 40.0 | 3.27e-01 | 100.0% | 28.8% |
| 4627519 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 32.0 | 4.82e-01 | 99.0% | 95.0% |
| 3214149 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.77 | 39.0 | 4.77e-01 | 99.0% | 75.4% |
| 3610796 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 37.0 | 4.99e-01 | 92.9% | 96.0% |
| 1281147 | 9.23.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 | 0.64 | 32.0 | 3.30e-01 | 98.0% | 47.9% |
| 3590632 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.55 | 29.0 | 3.60e-01 | 93.9% | 89.1% |
| 3699699 | 5.1.4.179 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 | 0.54 | 27.0 | 2.07e-01 | 96.0% | 19.6% |
| 4009761 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.52 | 26.0 | 3.22e-01 | 98.0% | 73.8% |
| 3972407 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 40.0 | 3.37e-01 | 87.9% | 93.1% |