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OP172841.1__WAX18183.1__WC29P3_00004__00004

Bact-Vir

OP172841.1__WAX18183.1__WC29P3_00004__00004

Identity

Accession:
OP172841 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Weissella_phage_WC29P3

TaxID: 2968735

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-75
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k85A00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.66 48.0 5.01e-01 90.3% 86.2%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 53.0 5.10e-01 93.1% 90.1%
2wbpA00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.60 51.0 3.35e-01 97.2% 83.1%
1ji8A02 1.10.10.370 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DsrC protein, C-terminal domain 0.59 41.0 4.32e-01 88.9% 84.4%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 4.42e-01 87.5% 92.6%
2xkrA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 48.0 3.05e-01 94.4% 51.6%
3cqxC00 1.20.58.890 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.83e-01 81.9% 64.2%
3k9cB01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 39.0 3.18e-01 72.2% 95.4%
3cuxA02 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.56 49.0 4.15e-01 100.0% 81.0%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.55 45.0 4.28e-01 95.8% 95.5%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 32.0 3.34e-01 88.9% 62.9%
1e6bA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 39.0 3.42e-01 88.9% 50.5%
3pxvB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.54 48.0 3.54e-01 100.0% 63.0%
3dxlA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.52 43.0 3.56e-01 100.0% 87.1%
3hgkE00 1.20.1280.110 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.52 42.0 4.19e-01 93.1% 92.2%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 34.0 3.56e-01 93.1% 76.6%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3890430 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.60 42.0 3.84e-01 75.0% 62.0%
3542626 101.1.1.66 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.57 47.0 4.62e-01 95.8% 83.7%
3491328 101.6.1.0 ↗ alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C 0.55 39.0 3.83e-01 91.7% 70.5%
3896686 192.8.1.36 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain 0.55 33.0 2.98e-01 87.5% 44.0%
3226384 101.1.1.264 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.53 42.0 3.87e-01 87.5% 80.0%
3309008 375.1.1.246 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook 0.52 33.0 2.96e-01 79.2% 44.8%
3527001 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 36.0 3.63e-01 76.4% 85.3%
D2 high residues 78-136
PDB
Domain cluster: rep: OP172841.1__WAX18225.1__WC29P3_00046__00046__D164-219
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.77 49.0 5.68e-01 74.6% 95.1%
4usoA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.70 59.0 4.65e-01 100.0% 97.1%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 54.0 4.13e-01 100.0% 86.5%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.60 38.0 3.02e-01 89.8% 32.2%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 46.0 3.97e-01 100.0% 93.3%
2i00A03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.52 38.0 3.38e-01 81.4% 84.2%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 44.0 4.03e-01 100.0% 97.6%
1o5lA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 2.88e-01 100.0% 35.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
150439 6.1.1.22 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CCL2-like 0.71 60.0 4.65e-01 98.3% 93.6%
3486137 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.70 61.0 4.49e-01 100.0% 94.5%
3590224 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.69 61.0 4.67e-01 100.0% 57.0%
3954708 4325.1.1.9 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.64 39.0 4.17e-01 88.1% 72.0%
3941411 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.54 39.0 3.01e-01 84.7% 71.8%