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OP172841.1__WAX18225.1__WC29P3_00046__00046
Bact-VirOP172841.1__WAX18225.1__WC29P3_00046__00046
Identity
- Accession:
- OP172841 ↗
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-77
Domain cluster:
rep: NC_052658.1__YP_009986023.1__JR323_gp108__00169__D8-74
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kewB02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.56 | 35.0 | 2.90e-01 | 94.6% | 31.2% |
| 5d5gA00 | 2.90.10.10 | Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain | 0.53 | 42.0 | 3.79e-01 | 89.2% | 90.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4992092 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.60 | 47.0 | 4.83e-01 | 85.1% | 100.0% |
| 3587508 | 101.36.1.1 ↗ | alpha arrays › HTH › YetF C-terminal domain › YetF C-terminal domain › DUF421 | 0.57 | 40.0 | 4.32e-01 | 85.1% | 91.7% |
| 5067822 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.54 | 42.0 | 3.65e-01 | 82.4% | 78.2% |
| 3235798 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.52 | 41.0 | 3.19e-01 | 98.6% | 37.0% |
| 3587733 | 4980.1.1.0 ↗ | alpha superhelices › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 › Middle domain of Hypothetical protein MPN330 | 0.52 | 34.0 | 3.23e-01 | 78.4% | 55.6% |
| 3717855 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.52 | 40.0 | 4.09e-01 | 89.2% | 87.1% |
| 4958933 | 2004.1.1.1217 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7125 | 0.52 | 44.0 | 3.20e-01 | 100.0% | 67.6% |
| 5060856 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.52 | 40.0 | 3.32e-01 | 83.8% | 82.2% |
| 4938653 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.51 | 38.0 | 3.27e-01 | 83.8% | 83.8% |
D2
high
residues 85-159
Domain cluster:
rep: OP172841.1__WAX18183.1__WC29P3_00004__00004__D4-75
D3
high
residues 164-219
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4usoA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.70 | 59.0 | 4.56e-01 | 100.0% | 96.3% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 34.0 | 3.47e-01 | 96.4% | 62.5% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.53 | 36.0 | 3.21e-01 | 71.4% | 90.9% |
| 2dk1A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.51 | 32.0 | 3.33e-01 | 96.4% | 68.0% |
| 6nrzA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 37.0 | 2.80e-01 | 80.4% | 95.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587970 | 11.1.4.36 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA | 0.77 | 71.0 | 5.34e-01 | 100.0% | 47.2% |
| 4589827 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.60 | 54.0 | 4.15e-01 | 100.0% | 95.2% |
| 3491126 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.58 | 38.0 | 2.41e-01 | 96.4% | 12.5% |
| 4318011 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 49.0 | 3.85e-01 | 100.0% | 96.0% |
| 4031371 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.56 | 48.0 | 3.67e-01 | 100.0% | 93.6% |
| 5044376 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 46.0 | 2.88e-01 | 94.6% | 90.8% |
| 4211951 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.53 | 35.0 | 3.18e-01 | 98.2% | 47.5% |
| 3790774 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 46.0 | 3.59e-01 | 100.0% | 45.0% |
| 4939058 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.53 | 39.0 | 2.63e-01 | 82.1% | 28.4% |
| 5025491 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.52 | 36.0 | 2.79e-01 | 75.0% | 32.8% |
| 3595436 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.52 | 35.0 | 2.82e-01 | 73.2% | 90.4% |