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OP186293.1__UVD36456.1__RCXUPER_19__00009

Bact-Vir

OP186293.1__UVD36456.1__RCXUPER_19__00009

Identity

Accession:
OP186293 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodobacter_phage_RcXuper

TaxID: 2973496

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-110
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 56.0 6.11e-01 86.5% 94.4%
5u8kA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 67.0 6.28e-01 100.0% 87.9%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.72 54.0 5.81e-01 86.5% 94.7%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.34e-01 98.9% 80.9%
2hqrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.83e-01 100.0% 90.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.90e-01 86.5% 79.7%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 58.0 5.92e-01 100.0% 100.0%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 55.0 5.71e-01 95.5% 100.0%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 5.24e-01 88.8% 90.4%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.65 51.0 5.27e-01 86.5% 92.6%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.77e-01 97.8% 81.7%
2q2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.06e-01 91.0% 96.2%
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 5.61e-01 96.6% 95.7%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.37e-01 96.6% 95.3%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 41.0 4.75e-01 76.4% 98.3%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 5.05e-01 100.0% 94.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 48.0 4.50e-01 96.6% 72.3%
1oshA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.58 43.0 3.35e-01 80.9% 72.7%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.57 43.0 3.49e-01 82.0% 95.6%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 37.0 4.00e-01 80.9% 79.7%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 48.0 4.25e-01 96.6% 78.0%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.53 39.0 3.71e-01 82.0% 66.7%
6vvoE02 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 41.0 3.98e-01 86.5% 97.0%
3o4yA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 41.0 3.86e-01 87.6% 76.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049534 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 61.0 6.29e-01 86.5% 85.9%
3275918 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 57.0 6.38e-01 85.4% 98.6%
5072473 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 50.0 5.28e-01 86.5% 77.5%
3809378 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.73 52.0 5.75e-01 85.4% 95.7%
4304583 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 50.0 5.64e-01 85.4% 96.9%
3398923 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.71 51.0 5.37e-01 86.5% 83.7%
3618188 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.71 52.0 4.87e-01 87.6% 62.7%
3217621 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.71 52.0 5.71e-01 86.5% 97.1%
3583002 101.1.2.265 ↗ alpha arrays › HTH › HTH › winged helix domain › Stork_head 0.70 51.0 5.60e-01 86.5% 98.6%
5057164 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.22e-01 93.3% 74.0%
3372110 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.69 50.0 5.48e-01 86.5% 97.1%
3653189 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.69 48.0 5.38e-01 84.3% 100.0%
5056734 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 4.96e-01 91.0% 65.2%
3401123 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.68 47.0 5.02e-01 83.1% 84.0%
3643333 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.68 50.0 5.01e-01 86.5% 76.7%
3378595 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.68 49.0 4.41e-01 86.5% 54.4%
5022894 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.46e-01 94.4% 82.1%
4950232 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 5.45e-01 100.0% 88.9%
3608869 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.29e-01 87.6% 87.0%
3964745 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 5.01e-01 89.9% 83.7%
4957143 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.67 58.0 5.04e-01 95.5% 97.8%
3971509 101.1.2.851 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27731 0.66 54.0 5.41e-01 92.1% 87.8%
3398316 101.1.2.248 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.66 47.0 4.86e-01 88.8% 78.8%
4410528 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 4.22e-01 87.6% 47.0%
4954657 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 4.50e-01 100.0% 43.4%
5047007 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.53e-01 92.1% 87.4%
3600895 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 5.23e-01 96.6% 100.0%
3727859 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.65 50.0 3.60e-01 83.1% 53.6%
3414650 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.65 46.0 3.90e-01 87.6% 46.4%
3633326 101.1.2.33 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_beta 0.65 49.0 4.68e-01 86.5% 69.5%
3554511 101.1.2.206 ↗ alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.64 48.0 5.04e-01 86.5% 88.7%
3882993 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.64 45.0 3.75e-01 87.6% 43.3%
3227729 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.62 55.0 5.25e-01 100.0% 83.8%
3272642 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 55.0 5.37e-01 96.6% 96.8%
3466949 101.1.2.524 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.62 48.0 4.43e-01 87.6% 64.3%
3979850 101.1.1.11 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 0.62 46.0 4.70e-01 97.8% 82.4%
3313157 101.1.2.524 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.61 46.0 4.96e-01 86.5% 96.0%
3928101 108.1.1.30 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.61 43.0 3.51e-01 87.6% 39.4%
4971669 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 4.42e-01 100.0% 57.9%
3407922 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 54.0 4.78e-01 100.0% 100.0%
4665743 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 4.22e-01 87.6% 66.7%
3823610 101.1.10.36 ↗ alpha arrays › HTH › HTH › Cyclin-like › MOM1 0.60 44.0 4.02e-01 78.7% 67.5%
3598088 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.57 47.0 4.25e-01 96.6% 63.8%
4979355 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.40e-01 98.9% 77.3%
4023297 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.55 45.0 3.28e-01 94.4% 50.5%
4966184 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 42.0 4.12e-01 100.0% 77.9%
2526302 2500.1.1.3 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like 0.54 46.0 2.75e-01 95.5% 72.4%
3317563 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.53 42.0 3.82e-01 87.6% 72.0%
5026703 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.52 39.0 2.67e-01 82.0% 21.6%
4969592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 37.0 2.54e-01 79.8% 28.8%
3370898 108.1.1.101 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 0.50 40.0 2.83e-01 92.1% 27.5%