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OP186293.1__UVD36656.1__RCXUPER_238__00209
Bact-VirOP186293.1__UVD36656.1__RCXUPER_238__00209
Identity
- Accession:
- OP186293 ↗
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-69
Domain cluster:
rep: MN549360.1__QGZ14037.1__RL38J1_259__00259__D5-63
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.75 | 50.0 | 5.59e-01 | 80.6% | 94.0% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.69 | 59.0 | 5.02e-01 | 94.0% | 63.0% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.69 | 52.0 | 4.34e-01 | 82.1% | 69.7% |
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.66 | 47.0 | 4.21e-01 | 76.1% | 78.1% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 47.0 | 4.04e-01 | 79.1% | 47.7% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.64 | 43.0 | 3.64e-01 | 70.1% | 43.9% |
| 3pjvD01 | 3.30.110.200 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.64 | 48.0 | 4.63e-01 | 82.1% | 74.4% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.63 | 46.0 | 3.36e-01 | 79.1% | 29.5% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 43.0 | 3.84e-01 | 79.1% | 50.0% |
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.63 | 51.0 | 4.32e-01 | 95.5% | 65.0% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.62 | 42.0 | 3.59e-01 | 88.1% | 43.1% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.62 | 49.0 | 4.26e-01 | 89.6% | 73.4% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 46.0 | 2.92e-01 | 80.6% | 99.7% |
| 6pxyA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 47.0 | 3.94e-01 | 88.1% | 48.7% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 43.0 | 4.18e-01 | 79.1% | 71.1% |
| 1xeeA01 | 3.10.20.390 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS | 0.59 | 41.0 | 3.91e-01 | 74.6% | 64.6% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 39.0 | 3.31e-01 | 70.1% | 75.6% |
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 48.0 | 3.45e-01 | 92.5% | 72.2% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.59 | 45.0 | 3.19e-01 | 86.6% | 29.7% |
| 1dyqA02 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 48.0 | 3.94e-01 | 100.0% | 62.0% |
| 3b8fB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.58 | 48.0 | 3.92e-01 | 100.0% | 69.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 49.0 | 3.76e-01 | 98.5% | 79.0% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.57 | 47.0 | 4.19e-01 | 100.0% | 75.2% |
| 2orzA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 44.0 | 3.49e-01 | 88.1% | 50.6% |
| 1zxhA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 41.0 | 4.30e-01 | 92.5% | 94.6% |
| 4kh9A01 | 2.60.40.3870 | Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein PF16024, DUF4785 | 0.57 | 47.0 | 3.86e-01 | 94.0% | 50.8% |
| 4gr5C01 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.57 | 34.0 | 3.52e-01 | 85.1% | 62.5% |
| 1jx4A04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 46.0 | 4.14e-01 | 92.5% | 79.6% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 49.0 | 3.74e-01 | 98.5% | 57.5% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.56 | 47.0 | 4.32e-01 | 98.5% | 84.8% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 47.0 | 3.54e-01 | 100.0% | 69.6% |
| 1q9jB02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.56 | 45.0 | 3.33e-01 | 89.6% | 50.5% |
| 2euiA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 46.0 | 3.67e-01 | 92.5% | 81.4% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 45.0 | 4.12e-01 | 94.0% | 74.5% |
| 6grsA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.95e-01 | 95.5% | 68.4% |
| 3igrA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 45.0 | 3.42e-01 | 98.5% | 39.9% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 42.0 | 4.07e-01 | 94.0% | 98.7% |
| 4n30A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 42.0 | 3.21e-01 | 94.0% | 45.1% |
| 2qnuA00 | 3.40.1730.10 | Alpha Beta › 3-Layer(aba) Sandwich › pa0076 fold › pa0076 domain | 0.52 | 44.0 | 3.19e-01 | 100.0% | 57.3% |
| 2ob0C01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 43.0 | 3.42e-01 | 100.0% | 64.2% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 4.18e-01 | 86.6% | 96.4% |
| 2wxfA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.62e-01 | 98.5% | 74.8% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.90e-01 | 94.0% | 98.8% |
| 3liuA01 | 2.60.40.3160 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 43.0 | 3.68e-01 | 100.0% | 89.8% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 40.0 | 3.81e-01 | 94.0% | 98.8% |
| 1wh3A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 40.0 | 4.00e-01 | 94.0% | 100.0% |
| 3f95B00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.50 | 39.0 | 3.04e-01 | 91.0% | 67.1% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3605282 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.84 | 73.0 | 5.24e-01 | 94.0% | 97.2% |
| 3715301 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.83 | 72.0 | 5.57e-01 | 94.0% | 95.0% |
| 5016503 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.73 | 63.0 | 5.44e-01 | 100.0% | 76.4% |
| 3423452 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.71 | 48.0 | 3.82e-01 | 70.1% | 71.6% |
| 1498413 | 3894.1.1.0 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain | 0.71 | 45.0 | 3.56e-01 | 100.0% | 34.4% |
| 3423236 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 56.0 | 5.43e-01 | 94.0% | 77.3% |
| 4277361 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.70 | 59.0 | 4.61e-01 | 94.0% | 60.1% |
| 4659490 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.69 | 58.0 | 4.88e-01 | 94.0% | 60.0% |
| 3596087 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.67 | 51.0 | 4.45e-01 | 86.6% | 69.1% |
| 4975601 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.66 | 35.0 | 3.56e-01 | 100.0% | 50.8% |
| 3958896 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.66 | 43.0 | 4.51e-01 | 85.1% | 75.0% |
| 3282305 | 4187.1.1.0 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like | 0.66 | 49.0 | 4.86e-01 | 98.5% | 77.1% |
| 3337910 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.65 | 53.0 | 4.76e-01 | 94.0% | 80.0% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.64 | 51.0 | 4.69e-01 | 88.1% | 94.4% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 44.0 | 4.90e-01 | 79.1% | 98.0% |
| 3706132 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 53.0 | 4.93e-01 | 94.0% | 98.8% |
| 4939155 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 49.0 | 4.17e-01 | 88.1% | 67.2% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 46.0 | 3.85e-01 | 80.6% | 48.8% |
| 5049412 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.63 | 49.0 | 4.07e-01 | 88.1% | 64.0% |
| 4883629 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.62 | 51.0 | 4.40e-01 | 95.5% | 60.2% |
| 4928263 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 41.0 | 3.58e-01 | 70.1% | 46.4% |
| 4964887 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.62 | 48.0 | 4.05e-01 | 88.1% | 67.5% |
| 3972650 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 49.0 | 4.33e-01 | 94.0% | 99.1% |
| 4418109 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 48.0 | 3.86e-01 | 88.1% | 55.9% |
| 4946583 | 302.1.1.0 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain | 0.61 | 48.0 | 4.12e-01 | 88.1% | 69.6% |
| 4333681 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 48.0 | 4.05e-01 | 88.1% | 67.5% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.60 | 42.0 | 4.48e-01 | 79.1% | 92.7% |
| 3937632 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.60 | 39.0 | 2.85e-01 | 100.0% | 25.1% |
| 4568546 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.60 | 47.0 | 4.03e-01 | 89.6% | 67.2% |
| 3607227 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.59 | 41.0 | 4.53e-01 | 73.1% | 96.0% |
| 3501741 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.59 | 34.0 | 3.55e-01 | 98.5% | 60.0% |
| 4983643 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.59 | 41.0 | 3.63e-01 | 74.6% | 64.8% |
| 3577630 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.59 | 51.0 | 4.15e-01 | 100.0% | 100.0% |
| 4631411 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.58 | 50.0 | 3.86e-01 | 97.0% | 51.9% |
| 5022447 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 50.0 | 4.14e-01 | 100.0% | 60.8% |
| 332272 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.58 | 48.0 | 3.92e-01 | 100.0% | 69.7% |
| 4945976 | 302.4.1.1 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.58 | 42.0 | 3.55e-01 | 79.1% | 93.3% |
| 4927303 | 525.1.1.1 ↗ | a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma | 0.56 | 47.0 | 3.97e-01 | 95.5% | 95.0% |
| 4965603 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 47.0 | 3.66e-01 | 98.5% | 83.9% |
| 4982257 | 3662.1.1.4 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac | 0.55 | 39.0 | 3.40e-01 | 76.1% | 67.6% |
| 3231452 | 11.1.1.397 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DM13 | 0.54 | 45.0 | 3.77e-01 | 95.5% | 59.2% |
| 3307205 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.54 | 44.0 | 3.80e-01 | 100.0% | 66.4% |
| 5023939 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 46.0 | 3.96e-01 | 100.0% | 63.6% |
| 3806728 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 43.0 | 3.96e-01 | 95.5% | 95.6% |
| 3217778 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.52 | 43.0 | 3.80e-01 | 100.0% | 86.4% |
| None | — | 0.52 | 44.0 | 3.58e-01 | 100.0% | 92.8% |