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OP263969.1__UXE02830.1__Koombakaat1_00040__00040
Bact-VirOP263969.1__UXE02830.1__Koombakaat1_00040__00040
Identity
- Accession:
- OP263969 ↗
- Kingdom:
- phage
Quality
64.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Silviavirus›
Staphylococcus_phage_Koomba-kaat_1
TaxID: 2980087
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-45
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jqwC00 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 61.0 | 4.39e-01 | 100.0% | 32.2% |
| 7rskA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.74 | 63.0 | 4.77e-01 | 100.0% | 49.5% |
| 2mm0A00 | 2.10.70.110 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.73 | 63.0 | 5.55e-01 | 100.0% | 92.2% |
| 3l48A01 | 2.60.40.2070 | Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain | 0.72 | 55.0 | 4.67e-01 | 100.0% | 48.7% |
| 5icuA00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 60.0 | 4.63e-01 | 100.0% | 42.2% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 60.0 | 4.78e-01 | 100.0% | 48.9% |
| 3hn3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 60.0 | 4.56e-01 | 100.0% | 46.2% |
| 4ba8A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 55.0 | 4.40e-01 | 100.0% | 50.0% |
| 6ecaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 58.0 | 4.58e-01 | 100.0% | 45.3% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 58.0 | 4.54e-01 | 100.0% | 44.8% |
| 2vzsA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 55.0 | 4.33e-01 | 100.0% | 50.5% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 53.0 | 4.21e-01 | 100.0% | 42.9% |
| 1cduA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 53.0 | 4.24e-01 | 100.0% | 64.3% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 53.0 | 4.21e-01 | 100.0% | 44.9% |
| 2w4lB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.63 | 55.0 | 3.75e-01 | 100.0% | 42.0% |
| 3bgaA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 52.0 | 4.10e-01 | 100.0% | 45.7% |
| 6efyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 51.0 | 4.09e-01 | 100.0% | 53.1% |
| 3gyrA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.62 | 51.0 | 3.37e-01 | 100.0% | 33.3% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.60 | 48.0 | 4.17e-01 | 100.0% | 62.8% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.60 | 47.0 | 3.45e-01 | 100.0% | 55.7% |
| 3uzeC00 | 2.60.40.350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 50.0 | 3.97e-01 | 100.0% | 45.7% |
| 4lesA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 42.0 | 3.20e-01 | 100.0% | 45.8% |
| 3iiiA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 47.0 | 3.18e-01 | 100.0% | 47.0% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.68e-01 | 100.0% | 50.0% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.55 | 47.0 | 3.98e-01 | 100.0% | 65.3% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 45.0 | 3.37e-01 | 100.0% | 95.9% |
| 3u28C00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.54 | 41.0 | 3.50e-01 | 100.0% | 60.9% |
| 2uurA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 2.95e-01 | 100.0% | 43.8% |
| 2v3mA00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.52 | 41.0 | 3.45e-01 | 100.0% | 59.6% |
| 2jtyA00 | 2.60.40.1090 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain | 0.51 | 40.0 | 2.70e-01 | 100.0% | 21.2% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 45.0 | 3.15e-01 | 100.0% | 54.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 401494 | 10.32.1.19 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC | 0.75 | 61.0 | 4.39e-01 | 100.0% | 32.2% |
| 4990952 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.72 | 53.0 | 5.68e-01 | 97.7% | 100.0% |
| 4951620 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.71 | 61.0 | 4.56e-01 | 100.0% | 41.6% |
| 5083968 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.70 | 60.0 | 4.34e-01 | 100.0% | 34.4% |
| 5039338 | 10.1.2.183 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC | 0.69 | 57.0 | 4.15e-01 | 100.0% | 33.9% |
| 3320333 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 59.0 | 4.01e-01 | 100.0% | 34.7% |
| 4383595 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 57.0 | 4.28e-01 | 100.0% | 50.4% |
| 3562130 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 55.0 | 4.24e-01 | 100.0% | 52.7% |
| 3915532 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.66 | 51.0 | 4.12e-01 | 100.0% | 41.1% |
| 4928021 | 11.1.1.65 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CopC | 0.66 | 54.0 | 4.67e-01 | 100.0% | 61.3% |
| 4214292 | 11.1.5.60 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › FimA | 0.65 | 53.0 | 3.62e-01 | 100.0% | 64.2% |
| 4327733 | 11.1.1.171 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 | 0.64 | 52.0 | 4.16e-01 | 100.0% | 48.0% |
| 3595628 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.63 | 55.0 | 4.13e-01 | 100.0% | 41.0% |
| 3921128 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 51.0 | 3.41e-01 | 100.0% | 50.7% |
| 3355650 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.62 | 52.0 | 3.86e-01 | 100.0% | 68.3% |
| 3927342 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 51.0 | 4.04e-01 | 100.0% | 43.0% |
| 5017301 | 1.1.15.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › DUF2341 | 0.60 | 48.0 | 4.39e-01 | 100.0% | 73.8% |
| 4960568 | 10.1.2.181 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 | 0.60 | 50.0 | 3.55e-01 | 100.0% | 29.7% |
| 4950843 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.60 | 50.0 | 4.37e-01 | 95.3% | 96.9% |
| 4033062 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 46.0 | 3.68e-01 | 100.0% | 57.8% |
| 4960570 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 48.0 | 3.07e-01 | 100.0% | 18.4% |
| 5051893 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.56 | 50.0 | 4.08e-01 | 100.0% | 60.0% |
| 4989052 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 43.0 | 3.39e-01 | 100.0% | 53.3% |
| 3577271 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 42.0 | 3.95e-01 | 100.0% | 75.0% |
| 5010595 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 46.0 | 3.74e-01 | 100.0% | 54.1% |
| 4180999 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 46.0 | 4.59e-01 | 100.0% | 97.8% |
| 4580972 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 36.0 | 2.94e-01 | 83.7% | 95.5% |