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OP263969.1__UXE02973.1__Koombakaat1_00183__00183

Bact-Vir

OP263969.1__UXE02973.1__Koombakaat1_00183__00183

Identity

Accession:
OP263969 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Silviavirus› Staphylococcus_phage_Koomba-kaat_1

TaxID: 2980087

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.66e-01 72.2% 80.5%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 42.0 4.31e-01 97.2% 76.1%
4i8iA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 40.0 2.78e-01 75.0% 86.5%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.56 30.0 3.84e-01 84.7% 92.7%
4cvbA00 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.55 43.0 2.54e-01 84.7% 26.7%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 43.0 4.47e-01 100.0% 92.4%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 44.0 2.98e-01 93.1% 41.4%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 35.0 2.56e-01 72.2% 36.5%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 38.0 4.00e-01 90.3% 88.9%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.91e-01 98.6% 51.8%
5hqgA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.88e-01 100.0% 54.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978411 219.1.1.153 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › BtrH_N 0.73 50.0 3.71e-01 70.8% 42.8%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.69 47.0 4.93e-01 70.8% 87.7%
3660755 4.8.1.21 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.68 48.0 4.79e-01 73.6% 92.0%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 46.0 4.54e-01 72.2% 73.3%
4514731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.59e-01 77.8% 68.2%
4971470 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 45.0 4.50e-01 100.0% 72.0%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.63 48.0 4.34e-01 83.3% 70.0%
3173941 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.78e-01 98.6% 83.0%
4017127 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 39.0 2.72e-01 76.4% 83.9%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.55 49.0 4.83e-01 100.0% 94.7%
3791045 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.52 43.0 3.57e-01 95.8% 70.0%
3275520 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.50 45.0 2.86e-01 100.0% 42.3%
4195918 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 43.0 3.04e-01 98.6% 56.3%