OP272490.1UZT50001.1X__00090

Bact-Vir

OP272490.1__UZT50001.1__X__00090

Identity

Accession:: OP272490 ↗
Kingdom:: phage

Quality

92.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Kayfunavirus› Enterobacter_phage_01_vB_Eclo_IJM

TaxID: 2983351

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-60

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1x9mA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.91	80.0	5.21e-01	96.7%	24.8%
2gv9A03	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.71	64.0	4.31e-01	100.0%	45.7%
4toiA02	1.10.287.610	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.63	46.0	4.93e-01	80.0%	100.0%
7febA03	3.40.50.12790	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4	0.61	45.0	3.99e-01	95.0%	53.3%
1y89A00	3.40.50.1360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.60	51.0	3.44e-01	98.3%	24.5%
2bx2L02	3.40.1260.20	Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain	0.57	50.0	4.10e-01	98.3%	76.4%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.55	44.0	3.79e-01	86.7%	63.8%
2i7xA02	3.40.50.10890	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	45.0	3.31e-01	98.3%	51.1%
3laxA00	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.53	42.0	3.56e-01	88.3%	67.9%
1wu7A01	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.53	41.0	2.83e-01	90.0%	86.9%
6he0A01	3.30.300.30	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain	0.52	41.0	3.49e-01	88.3%	69.2%
2xxpA01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.52	42.0	3.50e-01	88.3%	51.4%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2455432	2484.1.1.68 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2	0.92	81.0	5.36e-01	96.7%	26.9%
1168767	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.92	80.0	5.31e-01	96.7%	26.7%
4992857	2484.1.1.68 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2	0.81	72.0	4.94e-01	100.0%	31.2%
4515580	2004.1.1.108 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SulA	0.65	49.0	3.74e-01	96.7%	34.3%
3422935	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.65	44.0	3.77e-01	70.0%	100.0%
3276390	4143.1.1.0 ↗	a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like	0.57	48.0	3.77e-01	93.3%	60.0%
4140196	327.10.1.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N	0.57	45.0	4.08e-01	88.3%	91.8%
4488279	109.4.1.295 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt	0.56	46.0	2.97e-01	100.0%	36.2%
4103691	7588.1.1.1 ↗	a/b three-layered sandwiches › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase › LYTB	0.55	39.0	3.49e-01	90.0%	49.5%
4678215	327.10.1.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N	0.52	42.0	3.96e-01	91.7%	98.7%
4240887	327.10.1.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N	0.52	42.0	3.79e-01	91.7%	88.2%
3587230	327.10.1.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N	0.51	42.0	3.79e-01	93.3%	88.2%
3988512	327.10.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related	0.51	39.0	3.74e-01	90.0%	98.7%

D2 medium residues 69-102

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4mt4A00	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.73	53.0	2.95e-01	79.4%	49.2%
4k7rA01	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.71	54.0	3.07e-01	88.2%	53.8%
4irlB02	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.65	48.0	3.82e-01	100.0%	53.8%
1rniA01	3.30.720.160	Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal	0.54	40.0	3.45e-01	97.1%	94.3%
3gi8C00	1.20.1740.10	Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I	0.51	39.0	2.26e-01	100.0%	8.0%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5045225	2003.1.2.24 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2	0.64	44.0	2.81e-01	70.6%	27.6%