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OP292654.1__UYE98828.1__XbC2_403__00399

Bact-Vir

OP292654.1__UYE98828.1__XbC2_403__00399

Identity

Accession:
OP292654 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 165-224
PDB
Domain cluster: representative
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 61.0 6.19e-01 95.0% 79.7%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.78 69.0 6.06e-01 100.0% 73.3%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 60.0 6.54e-01 96.7% 100.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 63.0 6.28e-01 100.0% 87.1%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 5.11e-01 100.0% 52.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 6.19e-01 100.0% 83.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 68.0 6.25e-01 100.0% 86.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.48e-01 100.0% 75.0%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 58.0 4.39e-01 86.7% 72.8%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.71 59.0 4.93e-01 100.0% 52.3%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.71 59.0 4.94e-01 100.0% 53.8%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 58.0 5.75e-01 93.3% 88.7%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 5.34e-01 100.0% 68.7%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 50.0 5.20e-01 78.3% 80.4%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 52.0 4.81e-01 80.0% 97.4%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 5.82e-01 100.0% 83.3%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 4.59e-01 100.0% 41.1%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 61.0 5.71e-01 100.0% 83.6%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 62.0 4.60e-01 100.0% 53.8%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 54.0 4.25e-01 86.7% 71.5%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 47.0 4.41e-01 78.3% 59.5%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.55e-01 96.7% 93.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 4.27e-01 96.7% 41.4%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 5.61e-01 100.0% 95.0%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.66 50.0 5.13e-01 90.0% 87.5%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 46.0 3.96e-01 75.0% 53.6%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.64 49.0 5.23e-01 90.0% 96.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 5.15e-01 100.0% 89.8%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 49.0 5.02e-01 91.7% 89.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 5.04e-01 98.3% 98.1%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 49.0 4.83e-01 88.3% 79.7%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 47.0 5.05e-01 86.7% 96.1%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 48.0 5.10e-01 91.7% 96.2%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 54.0 4.57e-01 100.0% 71.2%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 47.0 5.03e-01 88.3% 98.0%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 51.0 3.68e-01 100.0% 97.1%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.71e-01 100.0% 72.7%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 49.0 4.85e-01 90.0% 90.6%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 4.75e-01 95.0% 93.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 4.78e-01 90.0% 89.3%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 49.0 4.94e-01 91.7% 91.5%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 3.86e-01 100.0% 57.0%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 3.46e-01 76.7% 93.3%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.10e-01 100.0% 81.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 3.43e-01 76.7% 89.5%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 3.26e-01 100.0% 28.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 44.0 4.26e-01 91.7% 76.1%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 46.0 3.69e-01 91.7% 81.8%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 44.0 3.70e-01 100.0% 49.1%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 38.0 2.92e-01 73.3% 63.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 45.0 4.32e-01 91.7% 87.3%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.54 45.0 3.53e-01 95.0% 81.6%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 42.0 4.07e-01 91.7% 76.1%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 43.0 3.23e-01 90.0% 40.4%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.24e-01 100.0% 78.0%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 37.0 2.51e-01 75.0% 92.2%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.70e-01 91.7% 94.8%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 43.0 3.31e-01 100.0% 57.0%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.33e-01 98.3% 45.2%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 2.95e-01 100.0% 26.6%
1eujA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 36.0 2.81e-01 78.3% 52.4%
1s5uE00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 37.0 3.00e-01 81.7% 80.1%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 37.0 3.14e-01 78.3% 84.0%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.33e-01 100.0% 82.9%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.50 38.0 3.04e-01 93.3% 68.9%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 44.0 3.58e-01 100.0% 98.4%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 44.0 3.18e-01 100.0% 73.2%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 44.0 3.71e-01 100.0% 64.1%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 40.0 3.06e-01 90.0% 39.6%
1vqwA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 45.0 2.81e-01 100.0% 48.1%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.84 64.0 6.50e-01 98.3% 83.1%
3780847 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.84 68.0 4.95e-01 100.0% 34.7%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 70.0 5.03e-01 98.3% 34.6%
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 63.0 6.58e-01 98.3% 89.1%
147797 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 68.0 6.51e-01 100.0% 82.4%
3570368 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 64.0 5.37e-01 100.0% 53.0%
5034724 4.1.1.482 beta barrels › SH3 › SH3 › SH3 › DUF4314 0.79 64.0 6.64e-01 90.0% 94.5%
5025498 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.77 68.0 5.97e-01 100.0% 71.1%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.77 62.0 4.79e-01 100.0% 40.8%
5032454 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.75 64.0 4.95e-01 100.0% 43.1%
3880508 4.1.1.129 beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.75 63.0 5.39e-01 100.0% 57.9%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 57.0 5.54e-01 95.0% 73.8%
5071741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 58.0 5.88e-01 100.0% 85.0%
4284709 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.75 58.0 6.06e-01 100.0% 90.9%
4120629 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 61.0 5.69e-01 100.0% 73.3%
3730229 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.74 61.0 5.64e-01 100.0% 72.0%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 61.0 6.13e-01 96.7% 90.0%
3620698 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.73 58.0 4.98e-01 86.7% 84.2%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 64.0 5.31e-01 100.0% 57.0%
3591144 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 63.0 4.65e-01 95.0% 38.0%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 63.0 4.43e-01 100.0% 31.7%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.73 65.0 5.81e-01 100.0% 72.9%
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.72 59.0 5.27e-01 100.0% 62.2%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 61.0 5.97e-01 98.3% 85.9%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 65.0 5.56e-01 100.0% 65.3%
3305914 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.71 45.0 3.75e-01 70.0% 37.1%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 63.0 5.43e-01 100.0% 66.3%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.71 63.0 5.64e-01 100.0% 74.1%
3959770 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.71 62.0 5.48e-01 100.0% 68.9%
3281271 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 59.0 5.21e-01 100.0% 63.3%
3793656 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.71 59.0 4.48e-01 100.0% 38.6%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 62.0 5.69e-01 100.0% 82.5%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 62.0 5.48e-01 100.0% 68.9%
1117666 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.70 63.0 5.61e-01 100.0% 80.0%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.58e-01 100.0% 76.0%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 61.0 5.19e-01 100.0% 62.0%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 61.0 5.19e-01 100.0% 63.0%
3575865 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.69 54.0 5.23e-01 98.3% 75.7%
3924619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 60.0 4.81e-01 100.0% 49.2%
3790904 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.69 50.0 5.09e-01 80.0% 78.3%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 60.0 4.95e-01 100.0% 58.2%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 62.0 5.27e-01 100.0% 82.1%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 61.0 5.83e-01 100.0% 88.6%
3940607 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 51.0 5.15e-01 80.0% 83.1%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.37e-01 96.7% 90.9%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.67 57.0 5.50e-01 96.7% 85.7%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 60.0 5.03e-01 100.0% 60.0%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.14e-01 100.0% 67.8%
3166879 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 59.0 5.75e-01 100.0% 90.8%
3715285 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 58.0 4.32e-01 100.0% 41.3%
3602511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 4.78e-01 98.3% 71.4%
4068291 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.66 50.0 5.10e-01 91.7% 83.3%
5055172 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.65 50.0 5.26e-01 91.7% 90.9%
3205559 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.65 58.0 4.37e-01 100.0% 49.0%
2978978 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 59.0 5.50e-01 100.0% 84.0%
4114201 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.65 50.0 4.89e-01 91.7% 76.9%
3511505 9.23.1.6 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › DUF7042 0.65 55.0 4.36e-01 93.3% 75.0%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.51e-01 100.0% 91.4%
3437430 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.65 49.0 4.84e-01 90.0% 75.4%
3910933 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.64 49.0 4.98e-01 91.7% 83.3%
4034320 4.1.1.398 beta barrels › SH3 › SH3 › SH3 › YolD 0.64 52.0 5.02e-01 100.0% 80.9%
4405469 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.64 55.0 4.81e-01 100.0% 64.2%
3932647 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 56.0 5.04e-01 100.0% 70.6%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 46.0 4.98e-01 93.3% 92.0%
3740221 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 54.0 4.08e-01 100.0% 40.6%
4243071 3699.1.1.0 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.63 47.0 4.90e-01 90.0% 89.1%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.69e-01 100.0% 61.1%
5075523 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.63 50.0 3.17e-01 86.7% 53.6%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 51.0 4.84e-01 100.0% 74.7%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.15e-01 100.0% 100.0%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.62 53.0 4.45e-01 100.0% 77.3%
4456205 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.62 49.0 5.06e-01 91.7% 94.5%
5026267 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 48.0 4.44e-01 83.3% 74.7%
4998344 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 50.0 3.85e-01 88.3% 77.6%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.34e-01 100.0% 93.8%
4623446 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 49.0 3.83e-01 86.7% 54.8%
3967111 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.61 50.0 3.97e-01 91.7% 56.0%
3448975 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.61 51.0 5.02e-01 100.0% 90.8%
5032554 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 48.0 3.79e-01 86.7% 52.0%
3301015 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 5.00e-01 100.0% 92.3%
4944219 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.60 48.0 3.75e-01 86.7% 83.2%
4391061 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 48.0 3.81e-01 86.7% 53.3%
4346153 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 48.0 3.68e-01 86.7% 54.1%
5063379 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.60 47.0 3.36e-01 86.7% 45.0%
3263467 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 49.0 4.43e-01 90.0% 73.8%
3636503 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 53.0 5.03e-01 100.0% 88.6%
3964664 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.59 46.0 4.44e-01 88.3% 76.5%
5081502 4252.1.1.1 beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.56 44.0 3.53e-01 91.7% 95.7%
4966092 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 47.0 3.69e-01 91.7% 64.5%
4329871 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.56 44.0 3.12e-01 100.0% 27.4%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.55 46.0 3.98e-01 100.0% 95.2%
3266624 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.53 45.0 3.78e-01 100.0% 91.8%
3213725 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.53 41.0 2.81e-01 100.0% 20.1%
7765 4216.1.1.2 a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.53 43.0 3.59e-01 100.0% 77.8%
D2 medium residues 86-158
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.69 55.0 4.83e-01 86.3% 86.0%
5t5lA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 54.0 3.76e-01 84.9% 72.1%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 51.0 3.44e-01 79.5% 95.5%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 57.0 4.37e-01 93.2% 64.0%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.65 48.0 3.28e-01 78.1% 95.8%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.65 55.0 3.79e-01 98.6% 82.6%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 53.0 4.30e-01 94.5% 71.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.62 47.0 3.89e-01 82.2% 77.9%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 41.0 3.54e-01 74.0% 41.7%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.62 43.0 3.33e-01 72.6% 74.5%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 53.0 3.52e-01 100.0% 93.2%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 50.0 3.86e-01 97.3% 90.9%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.60 47.0 3.19e-01 82.2% 95.0%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.29e-01 98.6% 50.7%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.37e-01 100.0% 79.8%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.58 47.0 3.73e-01 89.0% 74.8%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.58 47.0 4.28e-01 97.3% 67.0%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 42.0 4.19e-01 78.1% 92.1%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.58 40.0 3.74e-01 76.7% 57.4%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 43.0 2.81e-01 82.2% 21.0%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.57 41.0 3.52e-01 79.5% 77.3%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.75e-01 84.9% 81.1%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.74e-01 87.7% 69.1%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 4.12e-01 87.7% 83.1%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 3.50e-01 87.7% 68.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.81e-01 91.8% 71.1%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 36.0 3.62e-01 72.6% 65.8%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.49e-01 75.3% 75.3%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 46.0 2.81e-01 100.0% 88.5%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 40.0 3.44e-01 90.4% 50.8%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 39.0 3.32e-01 83.6% 66.9%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.54e-01 95.9% 87.5%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.48e-01 86.3% 54.6%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 35.0 3.24e-01 71.2% 79.8%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 41.0 3.54e-01 91.8% 96.2%
4r9iA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 38.0 3.50e-01 86.3% 58.0%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 40.0 3.59e-01 91.8% 95.7%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 40.0 3.57e-01 91.8% 97.4%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 37.0 3.44e-01 90.4% 60.0%
4jcwA02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.50 34.0 3.28e-01 71.2% 80.0%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.36e-01 89.0% 86.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3247128 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.71 64.0 4.36e-01 100.0% 52.9%
3219284 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.69 62.0 4.17e-01 100.0% 52.8%
3216442 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.68 60.0 4.33e-01 100.0% 57.1%
3238631 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.68 59.0 4.10e-01 100.0% 53.1%
5019858 881.4.1.2 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.67 43.0 3.45e-01 71.2% 33.6%
3789884 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.67 51.0 3.58e-01 82.2% 57.4%
3508261 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.66 53.0 3.74e-01 87.7% 63.6%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.65 56.0 4.91e-01 95.9% 85.5%
3801065 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.65 49.0 3.44e-01 83.6% 58.1%
3427602 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.65 48.0 3.18e-01 79.5% 35.2%
3224579 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 59.0 3.81e-01 100.0% 36.6%
3930399 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.64 49.0 4.45e-01 82.2% 97.0%
3233897 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 56.0 4.74e-01 97.3% 76.7%
4028996 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 45.0 3.69e-01 76.7% 53.8%
4940816 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 41.0 3.83e-01 75.3% 51.6%
4960303 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 48.0 4.37e-01 80.8% 72.6%
4947406 2484.4.1.0 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.63 47.0 4.04e-01 79.5% 99.1%
3601552 9.1.1.4 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.61 48.0 4.24e-01 86.3% 86.4%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.61 48.0 4.69e-01 84.9% 88.7%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 53.0 3.68e-01 100.0% 60.8%
3798012 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.60 52.0 3.65e-01 100.0% 59.6%
3504023 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.59 40.0 2.87e-01 72.6% 75.6%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 51.0 3.76e-01 100.0% 73.8%
3219928 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.58 50.0 3.53e-01 100.0% 55.3%
4285338 5087.1.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.58 46.0 3.45e-01 87.7% 55.3%
3510987 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.58 48.0 3.02e-01 97.3% 33.0%
3440964 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 48.0 3.25e-01 100.0% 75.6%
5018537 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.57 40.0 3.62e-01 74.0% 86.0%
4928566 223.2.1.62 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF6659 0.56 44.0 3.83e-01 89.0% 100.0%
3181187 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.56 44.0 2.58e-01 89.0% 65.9%
2387792 1205.1.1.0 a+b two layers › C-terminal domain of CdiA toxin 0.56 40.0 4.04e-01 87.7% 77.3%
3566463 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 43.0 3.39e-01 89.0% 65.7%
3859768 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 44.0 3.44e-01 91.8% 65.7%
5022543 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.54 39.0 2.33e-01 75.3% 23.2%
5073557 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.42e-01 84.9% 91.4%
3936894 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.54 47.0 3.36e-01 100.0% 60.9%
3506845 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.54 44.0 3.21e-01 98.6% 60.4%
4947581 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.56e-01 82.2% 87.3%
3490881 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 37.0 3.07e-01 74.0% 42.7%
3461881 223.2.1.15 a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.53 40.0 3.41e-01 83.6% 95.2%
4945232 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 39.0 3.47e-01 84.9% 90.0%
4203238 220.1.1.217 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.52 43.0 3.08e-01 97.3% 98.4%
3919854 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.52 41.0 3.38e-01 91.8% 94.0%
3925335 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.50e-01 90.4% 92.0%
5049349 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.11e-01 82.2% 69.7%
3873823 316.1.1.16 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DZF_N 0.51 41.0 3.08e-01 93.2% 60.5%
5076907 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.42e-01 91.8% 88.1%
5063657 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 39.0 3.47e-01 91.8% 97.5%