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OP292654.1__UYE98854.1__XbC2_434__00425

Bact-Vir

OP292654.1__UYE98854.1__XbC2_434__00425

Identity

Accession:
OP292654 ↗
Kingdom:
phage

Quality

75.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Xanthomonas_phage_XbC2

TaxID: 2978503

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-96
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.64 56.0 4.53e-01 100.0% 84.9%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.64 55.0 4.44e-01 100.0% 51.0%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.95e-01 77.5% 96.4%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 51.0 4.34e-01 100.0% 91.7%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.63e-01 77.5% 89.7%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.97e-01 83.1% 74.7%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 48.0 4.45e-01 97.2% 79.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.38e-01 88.7% 81.8%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.95e-01 100.0% 94.0%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.56 46.0 3.96e-01 91.5% 67.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.93e-01 91.5% 76.8%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.55 48.0 4.32e-01 100.0% 98.0%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.55 45.0 4.20e-01 91.5% 94.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.68e-01 81.7% 76.0%
1ogoX01 2.60.350.10 Mainly Beta › Sandwich › Dex49a from penicillium minioluteum complex, domain 1 › Dextranase, N-terminal 0.54 38.0 2.81e-01 74.6% 71.4%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 4.06e-01 85.9% 94.3%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.89e-01 87.3% 89.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.53 34.0 3.88e-01 84.5% 97.9%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.53 38.0 2.65e-01 77.5% 98.8%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.67e-01 100.0% 58.9%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.72e-01 83.1% 75.3%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 36.0 2.99e-01 70.4% 79.2%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 46.0 2.99e-01 100.0% 24.6%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 3.39e-01 94.4% 80.1%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 4.01e-01 91.5% 92.1%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 45.0 3.83e-01 100.0% 69.4%
2jpeA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 45.0 3.73e-01 100.0% 67.4%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.52 44.0 3.72e-01 93.0% 75.2%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 41.0 3.52e-01 87.3% 54.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.32e-01 83.1% 75.0%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 3.06e-01 74.6% 43.5%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.27e-01 85.9% 78.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 4.06e-01 100.0% 95.3%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 2.99e-01 74.6% 42.1%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 3.65e-01 95.8% 100.0%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.39e-01 85.9% 68.1%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 41.0 4.11e-01 100.0% 93.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3369784 809.1.1.5 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › PHAF1 0.63 37.0 3.57e-01 74.6% 49.4%
3956567 304.148.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein Rv1825/MT1873 › Uncharacterized protein Rv1825/MT1873 › DUF881 0.63 54.0 4.35e-01 100.0% 48.7%
3505913 221.1.1.112 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ULD_3 0.62 53.0 4.72e-01 100.0% 92.7%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.54e-01 98.6% 76.2%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 42.0 4.59e-01 94.4% 94.5%
3903484 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.60 46.0 3.99e-01 83.1% 64.5%
3233874 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.64e-01 97.2% 96.8%
3993250 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.59 40.0 4.49e-01 88.7% 92.7%
3592359 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.38e-01 85.9% 81.1%
1263713 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.58 40.0 4.40e-01 88.7% 98.1%
2525277 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 44.0 4.70e-01 97.2% 100.0%
3741116 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 46.0 3.44e-01 87.3% 70.4%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 45.0 4.57e-01 87.3% 92.9%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.47e-01 94.4% 100.0%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.56 42.0 3.93e-01 100.0% 63.2%
3762030 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.56 46.0 3.86e-01 95.8% 52.8%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 44.0 4.63e-01 87.3% 100.0%
3273105 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 45.0 3.97e-01 90.1% 96.2%
3709314 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.67e-01 85.9% 74.2%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 42.0 3.83e-01 98.6% 60.0%
3707723 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 44.0 3.84e-01 85.9% 70.5%
3777243 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.55 43.0 3.48e-01 84.5% 81.5%
3200493 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.55 34.0 3.78e-01 83.1% 81.8%
5029031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.25e-01 91.5% 95.0%
3273564 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 43.0 3.98e-01 85.9% 75.6%
3920026 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.54 42.0 3.10e-01 95.8% 29.5%
3510676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 3.74e-01 94.4% 61.1%
4582465 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 42.0 3.70e-01 87.3% 80.0%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.53 44.0 4.12e-01 91.5% 90.9%
3501905 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.75e-01 85.9% 74.0%
3291237 1.1.5.15 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › F420H2_quin_red 0.53 41.0 3.53e-01 84.5% 76.7%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 44.0 3.83e-01 94.4% 77.4%
3868320 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.53 38.0 3.95e-01 87.3% 84.6%
3478678 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 4.18e-01 85.9% 93.3%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 4.13e-01 84.5% 100.0%
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 44.0 3.40e-01 95.8% 88.6%
5055297 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.84e-01 88.7% 69.4%
3484478 4.1.1.99 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_10 0.53 40.0 4.32e-01 93.0% 100.0%
3397846 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 4.01e-01 93.0% 100.0%
4929590 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.44e-01 85.9% 62.4%
3621818 4.1.1.333 ↗ beta barrels › SH3 › SH3 › SH3 › PF29330 0.52 35.0 3.82e-01 87.3% 100.0%
3830352 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.52 43.0 4.15e-01 95.8% 94.1%
3933047 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.52 43.0 3.42e-01 95.8% 79.4%
3969508 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 40.0 3.24e-01 91.5% 100.0%
3921926 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.49e-01 87.3% 65.8%
4977763 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 37.0 2.89e-01 76.1% 36.8%
3472332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 35.0 3.84e-01 81.7% 94.5%
3275700 6043.1.1.4 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 0.51 38.0 2.62e-01 80.3% 56.9%
3514467 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 40.0 3.31e-01 85.9% 63.8%
3283546 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 39.0 3.20e-01 84.5% 65.7%
3258463 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 4.15e-01 90.1% 92.0%
3523979 604.12.1.118 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF4537 0.51 34.0 3.62e-01 81.7% 83.3%
3855972 4.1.1.253 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4537 0.50 35.0 3.63e-01 87.3% 81.5%
4982411 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 36.0 2.99e-01 76.1% 42.3%
4453447 4294.1.1.1 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.50 41.0 3.54e-01 94.4% 90.8%