←Back to structures

OP292654.1__UYE98903.1__XbC2_502__00474

Bact-Vir

OP292654.1__UYE98903.1__XbC2_502__00474

Identity

Accession:
OP292654 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Xanthomonas_phage_XbC2

TaxID: 2978503

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-100
PDB
Domain cluster: rep: KU574722.1__AMM44045.1__CBB_482__00482__D43-92
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.70 56.0 4.33e-01 100.0% 39.8%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.69 40.0 3.28e-01 76.9% 31.9%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.69 47.0 3.95e-01 100.0% 40.7%
2kxqA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 37.0 4.31e-01 80.8% 93.3%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.64 50.0 5.17e-01 98.1% 95.8%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 38.0 3.88e-01 80.8% 58.0%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 37.0 4.36e-01 86.5% 90.9%
2yshA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 38.0 4.27e-01 86.5% 90.9%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.62 37.0 3.68e-01 80.8% 54.5%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 51.0 4.67e-01 100.0% 70.0%
1v9kA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.59 47.0 3.11e-01 90.4% 50.7%
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.58 49.0 3.79e-01 100.0% 46.4%
1iyxA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 50.0 3.83e-01 100.0% 54.4%
4e4tA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 46.0 3.26e-01 100.0% 82.7%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 45.0 3.17e-01 100.0% 25.9%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.31e-01 88.5% 87.7%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.54 43.0 3.57e-01 100.0% 46.7%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 35.0 2.46e-01 100.0% 18.8%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 44.0 3.51e-01 100.0% 43.2%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.53 45.0 3.42e-01 100.0% 61.3%
3g9kF01 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.53 41.0 3.01e-01 90.4% 44.2%
4gdxB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.53 42.0 2.92e-01 90.4% 52.4%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 33.0 3.26e-01 82.7% 58.9%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.03e-01 75.0% 86.7%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 40.0 3.57e-01 100.0% 68.8%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.26e-01 100.0% 43.0%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 39.0 3.06e-01 96.2% 40.6%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 39.0 2.86e-01 94.2% 52.0%
7wu1A01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.50 40.0 2.74e-01 88.5% 98.0%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.66e-01 96.2% 93.2%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.50 31.0 2.83e-01 78.8% 38.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5075465 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.75 61.0 5.81e-01 100.0% 76.7%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 54.0 4.13e-01 100.0% 36.5%
4188237 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.71 59.0 5.80e-01 100.0% 85.5%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.71 58.0 5.76e-01 100.0% 85.5%
4341865 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.71 58.0 5.73e-01 100.0% 85.5%
7726 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.70 56.0 5.45e-01 100.0% 81.0%
3940807 101.1.2.194 ↗ alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.67 42.0 3.03e-01 100.0% 23.6%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 58.0 5.77e-01 100.0% 98.2%
3300738 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.63 38.0 2.75e-01 76.9% 20.7%
2774420 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.62 35.0 2.37e-01 76.9% 14.2%
3217609 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.61 36.0 3.87e-01 80.8% 69.8%
3674411 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 46.0 4.62e-01 100.0% 85.5%
3645516 296.1.1.1 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.59 51.0 3.85e-01 100.0% 43.8%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.56 45.0 4.11e-01 96.2% 96.0%
3940961 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.56 46.0 3.76e-01 96.2% 50.5%
3209694 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 47.0 3.92e-01 100.0% 53.0%
4018331 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.55 45.0 3.29e-01 100.0% 31.2%
3426675 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.55 45.0 4.36e-01 100.0% 79.7%
5003581 2005.1.1.2 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b 0.54 46.0 2.74e-01 100.0% 12.8%
3576110 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.53 35.0 3.00e-01 100.0% 36.8%
3652231 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 44.0 2.81e-01 98.1% 57.7%
4564292 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 44.0 3.53e-01 100.0% 46.1%
3371393 4266.2.1.1 ↗ alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 0.53 36.0 2.59e-01 73.1% 22.5%
4211951 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.53 37.0 3.33e-01 98.1% 48.8%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.92e-01 100.0% 78.6%
3402088 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 43.0 2.99e-01 100.0% 71.0%
3720043 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.52 42.0 3.50e-01 100.0% 88.6%
3192965 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.52 44.0 2.72e-01 100.0% 98.2%
1871351 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.52 44.0 2.66e-01 98.1% 61.9%
5026348 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 35.0 3.14e-01 75.0% 48.8%
4975146 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 42.0 3.24e-01 100.0% 91.9%
4996687 2004.1.1.175 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.50 42.0 2.67e-01 100.0% 23.0%
4123857 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.50 31.0 3.25e-01 76.9% 72.5%