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OP296522.1__UYD72065.1__VG_p17__00017

Bact-Vir

OP296522.1__UYD72065.1__VG_p17__00017

Identity

Accession:
OP296522 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-57
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z7fB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.53 42.0 3.16e-01 94.7% 67.9%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 38.0 3.62e-01 78.9% 66.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927194 193.1.1.0 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.57 44.0 3.35e-01 98.2% 32.5%
5051657 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 40.0 2.89e-01 75.4% 57.1%
5020510 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 33.0 3.22e-01 100.0% 52.3%
3634198 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 36.0 3.46e-01 100.0% 63.1%
D2 medium residues 58-122
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.80 74.0 5.87e-01 100.0% 63.4%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.72 65.0 4.82e-01 100.0% 47.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.72 64.0 4.47e-01 100.0% 43.9%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.69 52.0 4.59e-01 83.1% 99.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 46.0 3.86e-01 70.8% 86.9%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 57.0 4.73e-01 100.0% 56.8%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 53.0 3.52e-01 100.0% 61.7%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.97e-01 84.6% 100.0%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 51.0 3.40e-01 100.0% 57.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 3.90e-01 90.8% 60.6%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 51.0 3.61e-01 98.5% 86.8%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 50.0 3.29e-01 100.0% 66.3%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 38.0 4.06e-01 75.4% 78.2%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 42.0 3.74e-01 78.5% 100.0%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 43.0 3.43e-01 84.6% 99.3%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.83e-01 86.2% 80.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.34e-01 87.7% 93.1%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 47.0 4.50e-01 92.3% 97.4%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 4.41e-01 89.2% 85.5%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 47.0 3.82e-01 100.0% 78.8%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.62e-01 80.0% 90.0%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.55 41.0 3.39e-01 84.6% 80.6%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.01e-01 96.9% 72.5%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.55 45.0 3.43e-01 95.4% 93.6%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.55 41.0 3.39e-01 84.6% 81.8%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.28e-01 86.2% 69.8%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 45.0 3.85e-01 90.8% 63.5%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.93e-01 73.8% 100.0%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 3.96e-01 84.6% 78.9%
5d2lE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.80e-01 93.8% 89.8%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.55e-01 80.0% 53.6%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.00e-01 81.5% 97.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.34e-01 86.2% 95.0%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.81e-01 89.2% 61.6%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.67e-01 84.6% 82.8%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 3.86e-01 75.4% 96.8%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 45.0 3.73e-01 100.0% 94.6%
5xnrA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.12e-01 100.0% 70.7%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.53 46.0 3.64e-01 100.0% 74.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.64e-01 83.1% 89.5%
2cayB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.35e-01 87.7% 66.4%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.50e-01 86.2% 80.6%
2yzyA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 41.0 3.13e-01 89.2% 82.8%
6mjjC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.65e-01 95.4% 88.6%
1vx4404 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.28e-01 90.8% 69.3%
5eiqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.85e-01 93.8% 89.0%
2j42A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.51 39.0 2.74e-01 84.6% 61.3%
1j0hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 3.62e-01 98.5% 76.0%
3m70A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.56e-01 92.3% 64.2%
3kg5A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.76e-01 98.5% 81.6%
7c8fA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 2.71e-01 89.2% 93.4%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.03e-01 100.0% 77.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3664710 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.70 56.0 5.14e-01 87.7% 74.1%
3376270 4.2.1.4 beta barrels › SH3 › SAND › SAND › TDBD 0.69 55.0 5.24e-01 86.2% 82.7%
3600457 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.66 57.0 3.64e-01 100.0% 58.5%
3719044 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.66 57.0 3.62e-01 100.0% 58.9%
3692594 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.66 56.0 3.48e-01 100.0% 88.4%
3926623 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.64 55.0 5.36e-01 98.5% 98.6%
3652683 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 54.0 3.38e-01 100.0% 59.7%
3418449 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.63 53.0 3.30e-01 100.0% 41.4%
4029082 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.88e-01 87.7% 100.0%
3358186 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.62 52.0 3.37e-01 100.0% 56.4%
3382767 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.62 52.0 3.39e-01 100.0% 53.6%
3940760 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 52.0 3.42e-01 100.0% 52.4%
4029745 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.61 52.0 3.36e-01 100.0% 50.6%
3737025 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 51.0 3.29e-01 100.0% 53.5%
3247178 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.61 53.0 5.00e-01 100.0% 96.2%
3694580 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 51.0 3.23e-01 100.0% 58.2%
3783065 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 51.0 3.27e-01 100.0% 51.2%
26896 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.60 52.0 4.82e-01 98.5% 88.4%
4012827 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 50.0 3.13e-01 98.5% 53.5%
3630251 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.60 51.0 4.85e-01 98.5% 95.0%
4017540 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 51.0 3.31e-01 100.0% 56.4%
3788099 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 51.0 3.20e-01 100.0% 53.0%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.60 49.0 4.39e-01 100.0% 69.5%
3178434 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 50.0 3.25e-01 100.0% 44.9%
3255440 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 50.0 3.22e-01 100.0% 60.2%
3739929 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.60 50.0 3.32e-01 100.0% 57.5%
4533388 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.60 51.0 3.58e-01 100.0% 58.7%
3458699 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.59 41.0 3.06e-01 73.8% 28.8%
3932677 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 49.0 3.90e-01 100.0% 65.1%
3993647 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 50.0 3.26e-01 100.0% 53.7%
3619334 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 4.16e-01 87.7% 90.0%
5012404 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 3.93e-01 95.4% 78.5%
3636498 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 48.0 3.16e-01 100.0% 57.7%
3237895 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 49.0 3.20e-01 100.0% 56.7%
4478971 4.1.1.174 beta barrels › SH3 › SH3 › SH3 › DUF951 0.58 47.0 4.76e-01 92.3% 96.9%
4988664 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 4.13e-01 81.5% 98.7%
5036621 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.46e-01 87.7% 96.4%
3213121 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.57 47.0 4.56e-01 96.9% 97.3%
4930436 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.57 44.0 3.72e-01 87.7% 79.1%
3236058 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 48.0 4.46e-01 100.0% 90.6%
3938714 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 42.0 3.56e-01 86.2% 65.6%
4029828 220.1.1.59 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.55 41.0 3.34e-01 84.6% 75.0%
4890983 6110.1.1.0 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain 0.55 41.0 2.58e-01 83.1% 18.4%
2897750 220.1.1.59 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.55 41.0 3.24e-01 84.6% 70.6%
3244743 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 45.0 3.60e-01 100.0% 60.7%
2559425 220.1.1.59 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.54 40.0 3.33e-01 84.6% 81.2%
4584002 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.54 40.0 3.57e-01 86.2% 81.9%
3230955 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 44.0 3.09e-01 100.0% 62.4%
5054738 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.89e-01 83.1% 87.3%
4467867 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.53 42.0 3.38e-01 92.3% 65.5%
3175342 633.23.1.37 alpha bundles › Bromodomain-like › Claudin › Claudin › PF29133 0.53 40.0 2.75e-01 86.2% 84.8%
3521199 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.53 40.0 3.34e-01 87.7% 76.9%
3842150 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 44.0 3.37e-01 100.0% 78.3%
4212091 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 41.0 4.16e-01 89.2% 93.8%
3597004 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.52 40.0 3.29e-01 87.7% 66.7%
3273237 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.52 39.0 3.34e-01 86.2% 64.8%
4565886 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 39.0 3.24e-01 86.2% 79.7%
3781009 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 2.74e-01 87.7% 36.4%
4149821 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 4.03e-01 84.6% 95.0%
3946569 244.2.1.7 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rubredoxin_C 0.51 35.0 3.39e-01 70.8% 72.5%
3607882 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.29e-01 81.5% 84.5%
5057445 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.51 43.0 4.01e-01 96.9% 95.3%
3574392 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.18e-01 83.1% 78.3%
3495986 220.1.1.26 beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II 0.51 42.0 3.35e-01 98.5% 84.0%
4301684 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.50 42.0 3.18e-01 100.0% 94.5%
4020676 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 37.0 2.78e-01 84.6% 79.0%