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OP296522.1__UYD72076.1__VG_p28__00028

Bact-Vir

OP296522.1__UYD72076.1__VG_p28__00028

Identity

Accession:
OP296522 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Variovorax_phage_VarioGold

TaxID: 2981550

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 103-206
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.55 44.0 4.54e-01 99.0% 95.9%
1ee6A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.54 48.0 3.95e-01 100.0% 66.5%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.53 47.0 3.19e-01 100.0% 46.6%
3vkgA17 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 39.0 3.69e-01 92.3% 66.1%
1gq8A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.52 46.0 3.32e-01 100.0% 47.8%
3bh7B01 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 45.0 3.75e-01 100.0% 65.3%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.51 44.0 3.56e-01 100.0% 65.1%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 45.0 3.52e-01 100.0% 94.9%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 43.0 3.23e-01 96.2% 38.3%
2gnoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 3.64e-01 96.2% 65.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286193 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.60 44.0 3.62e-01 77.9% 41.6%
3715374 207.14.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DGF-1_beta-sheet 0.60 35.0 3.57e-01 78.8% 57.1%
4856486 207.9.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › LD_SV2 0.59 48.0 4.70e-01 100.0% 83.8%
3286791 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.56 45.0 4.51e-01 100.0% 85.5%
3252391 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.55 49.0 3.96e-01 100.0% 64.8%
3983450 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.55 49.0 4.73e-01 98.1% 99.1%
5047056 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.54 47.0 3.80e-01 100.0% 57.7%
4796735 207.2.1.32 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › CatAgl_D2 0.54 48.0 3.33e-01 100.0% 56.7%
4003464 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.53 47.0 3.34e-01 100.0% 43.1%
4244664 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.53 46.0 3.80e-01 100.0% 93.2%
5047741 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.53 46.0 3.73e-01 98.1% 89.0%
3266008 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.53 45.0 3.71e-01 97.1% 56.1%
4969460 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.53 45.0 3.87e-01 98.1% 61.7%
2485695 207.15.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › beta-helix of amnionless (AMN) extracellular domain › beta-helix of amnionless (AMN) extracellular domain › Amnionless 0.52 27.0 2.87e-01 90.4% 53.8%
5077354 2004.5.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.52 37.0 2.78e-01 92.3% 28.9%
5012648 207.2.1.35 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF4097 0.51 46.0 3.64e-01 100.0% 73.0%
5009811 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.51 43.0 3.69e-01 100.0% 63.7%
5083442 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.50 43.0 3.39e-01 100.0% 88.6%
4179070 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.50 44.0 3.45e-01 100.0% 54.0%
D2 medium residues 3-93
PDB
Domain cluster: representative