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OP296522.1__UYD72083.1__VG_p35__00035

Bact-Vir

OP296522.1__UYD72083.1__VG_p35__00035

Identity

Accession:
OP296522 ↗
Kingdom:
phage

Quality

78.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Variovorax_phage_VarioGold

TaxID: 2981550

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-116
PDB
Domain cluster: rep: MW960030.1__QWY82978.1__X__00024__D5-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02195.27 best ParB_N 74.7 8.00e-21 100.0% 74.8%
D2 high residues 417-553
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1st6A02 1.20.120.810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle 0.54 31.0 2.63e-01 84.7% 32.2%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.54 31.0 3.34e-01 82.5% 64.7%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.51 28.0 3.05e-01 70.8% 62.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013341 3755.4.1.3 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Helo_like_N 0.54 30.0 3.19e-01 81.0% 57.6%
3313420 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.54 30.0 3.06e-01 81.8% 52.9%
3624439 611.4.1.0 ↗ alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like 0.52 33.0 3.15e-01 83.2% 53.0%
3927522 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 33.0 3.03e-01 83.2% 48.9%
3617266 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.50 34.0 3.62e-01 83.9% 77.5%
D3 medium residues 309-396
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.58 27.0 3.66e-01 83.0% 88.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3232782 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 42.0 4.65e-01 75.0% 91.4%
D4 medium residues 650-769
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 36.0 5.38e-01 100.0% 96.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 36.0 4.97e-01 85.8% 85.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 35.0 4.81e-01 97.5% 85.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 37.0 4.84e-01 80.0% 82.6%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.71 47.0 5.24e-01 80.0% 84.2%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 33.0 4.64e-01 98.3% 88.7%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 38.0 4.76e-01 96.7% 89.2%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.68 46.0 5.09e-01 80.0% 85.6%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 35.0 4.49e-01 96.7% 88.2%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 34.0 4.57e-01 96.7% 93.7%
2jngA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.92e-01 99.2% 93.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 33.0 4.56e-01 96.7% 98.3%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.79e-01 100.0% 89.4%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 33.0 4.38e-01 96.7% 95.2%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.61 38.0 4.64e-01 81.7% 98.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 33.0 4.25e-01 95.8% 97.1%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 35.0 3.61e-01 86.7% 62.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 34.0 3.81e-01 97.5% 78.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.82 43.0 5.85e-01 99.2% 95.4%
4059465 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.82 41.0 5.53e-01 100.0% 88.2%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 43.0 4.42e-01 100.0% 54.8%
3703934 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 36.0 5.13e-01 100.0% 88.3%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.79 32.0 4.79e-01 95.8% 85.5%
3937194 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.78 41.0 5.55e-01 100.0% 95.4%
5074039 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 45.0 5.76e-01 100.0% 94.7%
5067227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 47.0 5.69e-01 77.5% 90.4%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 40.0 5.21e-01 99.2% 91.4%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 39.0 4.99e-01 99.2% 85.3%
4937705 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.74 47.0 5.45e-01 80.0% 86.7%
3941170 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.74 39.0 5.16e-01 99.2% 91.4%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 48.0 5.54e-01 80.0% 88.9%
3456496 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.73 40.0 4.09e-01 100.0% 56.5%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.73 45.0 5.40e-01 78.3% 89.4%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 48.0 5.28e-01 80.0% 81.0%
5050368 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 48.0 5.31e-01 80.0% 82.7%
4284598 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 47.0 5.44e-01 80.0% 88.9%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 39.0 5.04e-01 82.5% 91.4%
4932696 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.72 47.0 5.17e-01 80.0% 80.0%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.28e-01 80.0% 53.5%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.68 47.0 5.12e-01 80.0% 83.8%
4878827 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 34.0 4.66e-01 96.7% 96.8%
3596265 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.26e-01 77.5% 90.0%
3607985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 41.0 4.37e-01 100.0% 71.4%
3926175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.63e-01 95.0% 84.7%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.85e-01 80.0% 93.8%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.63e-01 83.3% 88.2%
3936225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 35.0 4.38e-01 77.5% 92.9%
3592013 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 41.0 4.27e-01 100.0% 72.2%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.61 43.0 4.37e-01 73.3% 95.0%
None — 0.59 44.0 2.98e-01 77.5% 59.5%
3928050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.09e-01 77.5% 91.1%
3308545 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.56 37.0 3.40e-01 72.5% 50.6%
3354687 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.56 40.0 4.03e-01 80.0% 74.2%
3416068 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.55 42.0 3.86e-01 80.8% 75.5%
3494307 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.54 37.0 3.70e-01 97.5% 67.2%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.54 47.0 4.45e-01 95.0% 95.2%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.52 38.0 4.07e-01 100.0% 86.7%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.51 44.0 4.38e-01 100.0% 88.8%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 46.0 4.67e-01 100.0% 97.5%