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OP310984.1__UXD83619.1__NP274_00212__00212

Bact-Vir

OP310984.1__UXD83619.1__NP274_00212__00212

Identity

Accession:
OP310984 ↗
Kingdom:
phage

Quality

87.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Phikzvirus› Pseudomonas_phage_Koomba_boorn-mokiny_kep-wari_Wadjak_2

TaxID: 2979353

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07453.20 best NUMOD1 34.9 1.90e-08 52.9% 97.3%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 40.0 3.15e-01 70.0% 26.7%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 53.0 5.37e-01 94.3% 85.3%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 36.0 3.02e-01 78.6% 31.3%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 39.0 3.39e-01 81.4% 39.6%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 38.0 3.56e-01 80.0% 47.7%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 40.0 4.18e-01 80.0% 68.2%
4mloA01 2.60.120.810 Mainly Beta › Sandwich › Jelly Rolls › 0.64 35.0 2.70e-01 78.6% 23.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.63 37.0 3.02e-01 70.0% 31.3%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 37.0 3.52e-01 70.0% 48.8%
3nrvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 37.0 3.08e-01 70.0% 32.6%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.51e-01 70.0% 49.5%
1uasA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 33.0 3.06e-01 78.6% 43.2%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.27e-01 81.4% 43.5%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 35.0 3.32e-01 71.4% 47.7%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 35.0 4.09e-01 80.0% 91.3%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 36.0 3.40e-01 80.0% 53.0%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 36.0 3.38e-01 70.0% 50.6%
3bpnC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.34e-01 80.0% 47.5%
3tiiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 32.0 3.36e-01 80.0% 58.5%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.80e-01 71.4% 69.0%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 36.0 3.47e-01 72.9% 92.2%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 3.65e-01 71.4% 78.9%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 37.0 3.18e-01 81.4% 46.8%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 35.0 3.06e-01 77.1% 46.2%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.52 36.0 3.26e-01 78.6% 54.9%
1zc1A01 2.40.40.50 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain 0.52 38.0 3.32e-01 80.0% 51.5%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.52 37.0 3.09e-01 77.1% 43.4%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.01e-01 72.9% 80.8%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 2.37e-01 78.6% 65.1%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.51 37.0 3.45e-01 78.6% 64.1%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 34.0 3.32e-01 70.0% 97.5%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.50 36.0 3.23e-01 75.7% 92.0%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 40.0 3.54e-01 92.9% 91.2%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.82 54.0 6.29e-01 71.4% 96.0%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.71 61.0 6.17e-01 100.0% 95.7%
5073275 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.70 36.0 3.11e-01 77.1% 33.3%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.69 57.0 5.35e-01 95.7% 74.1%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.69 53.0 5.34e-01 94.3% 84.1%
4004207 11.1.4.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_5th 0.68 39.0 3.73e-01 80.0% 50.0%
4052150 10.12.1.33 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Ectoine_synth 0.67 36.0 2.91e-01 78.6% 28.8%
5066729 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.67 39.0 3.59e-01 77.1% 45.6%
3512155 560.1.1.3 ↗ few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › DUF5648 0.67 38.0 3.43e-01 81.4% 41.1%
3389022 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 39.0 4.47e-01 98.6% 88.0%
4858277 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 37.0 3.46e-01 81.4% 48.9%
5056065 3156.1.1.0 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.60 35.0 3.07e-01 77.1% 41.0%
3518250 822.2.1.0 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like 0.59 31.0 3.86e-01 77.1% 87.5%
3400352 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.59 39.0 4.34e-01 98.6% 88.9%
4635237 12.1.1.52 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLGE_C 0.59 34.0 2.99e-01 78.6% 40.0%
3389034 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.58 37.0 4.10e-01 92.9% 81.8%
3923581 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 37.0 3.25e-01 78.6% 45.0%
3593442 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 33.0 2.90e-01 80.0% 36.2%
4943757 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.91e-01 70.0% 75.4%
3956578 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.56 44.0 3.40e-01 88.6% 38.7%
4930766 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.55 38.0 3.06e-01 85.7% 37.0%
4021338 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.55 40.0 3.50e-01 80.0% 53.0%
3675525 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 33.0 3.37e-01 81.4% 60.3%
4935672 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.54 39.0 3.14e-01 88.6% 37.9%
4645846 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.53 36.0 2.77e-01 100.0% 28.8%
2577567 1.1.2.6 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Asp_decarbox 0.53 36.0 3.31e-01 78.6% 54.3%
3440503 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.53 38.0 3.46e-01 74.3% 92.6%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.53 39.0 3.67e-01 81.4% 64.7%
4403519 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 35.0 2.74e-01 100.0% 28.8%
3782443 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.51 45.0 3.43e-01 100.0% 82.4%
D2 high residues 88-155
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_43_prodigal-single.1__X__X__00148__D462-534
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07453.20 best NUMOD1 34.9 1.90e-08 51.5% 94.6%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 60.0 6.03e-01 76.5% 73.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.58 36.0 3.76e-01 85.3% 68.9%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 39.0 4.23e-01 73.5% 100.0%
2qyzA01 3.30.1490.160 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains 0.55 37.0 4.08e-01 76.5% 90.6%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.23e-01 91.2% 88.5%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.54 38.0 4.13e-01 73.5% 98.1%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 29.0 3.63e-01 77.9% 97.3%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.97e-01 89.7% 89.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.48e-01 97.1% 54.7%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.51 39.0 3.83e-01 82.4% 82.2%
2ox7A01 2.30.30.310 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.50 34.0 3.60e-01 70.6% 98.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.85 60.0 5.99e-01 76.5% 72.5%
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.85 61.0 6.75e-01 75.0% 100.0%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.76 52.0 5.94e-01 76.5% 98.0%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.75 54.0 5.45e-01 77.9% 75.4%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.74 52.0 5.84e-01 75.0% 100.0%
2760149 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.57 48.0 4.41e-01 95.6% 77.2%
3788382 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.56 48.0 4.57e-01 95.6% 88.7%
3958148 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 43.0 3.41e-01 82.4% 65.2%
3516486 101.1.15.1 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.55 46.0 4.26e-01 95.6% 78.9%
3627319 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 4.33e-01 82.4% 100.0%
5050479 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.76e-01 83.8% 72.2%
3218658 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 38.0 2.57e-01 76.5% 28.7%
3500577 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.52 41.0 4.00e-01 92.6% 92.5%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.51 38.0 3.42e-01 79.4% 58.9%
4228237 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.51 35.0 3.92e-01 70.6% 100.0%
3514709 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.50 37.0 4.07e-01 80.9% 98.2%
5047649 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.50 35.0 3.97e-01 76.5% 100.0%
D3 high residues 167-216
PDB
Domain cluster: rep: NC_042127.1__YP_009624850.1__FDJ52_gp62__00062__D10-58
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07453.20 best NUMOD1 35.2 1.60e-08 72.0% 94.6%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hh2D03 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.70 42.0 4.72e-01 100.0% 79.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.60 41.0 3.91e-01 100.0% 59.0%
2bc0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.07e-01 88.0% 71.0%
2qyzA01 3.30.1490.160 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains 0.59 47.0 4.70e-01 100.0% 86.8%
4ba0A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 39.0 3.89e-01 98.0% 66.7%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 51.0 4.97e-01 100.0% 100.0%
3obaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.20e-01 100.0% 40.4%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.56 49.0 3.53e-01 100.0% 93.6%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 36.0 3.99e-01 98.0% 91.9%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 39.0 4.07e-01 100.0% 86.7%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.21e-01 98.0% 81.2%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 46.0 4.02e-01 100.0% 63.4%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.54 46.0 3.30e-01 100.0% 82.3%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 34.0 2.90e-01 98.0% 39.3%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 33.0 3.40e-01 96.0% 66.7%
3gidB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 38.0 3.31e-01 82.0% 96.4%
3cjmA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 46.0 2.89e-01 100.0% 77.3%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.51 37.0 3.81e-01 100.0% 85.7%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 35.0 2.87e-01 100.0% 37.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4519945 101.1.14.4 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › PF31232 0.84 76.0 7.43e-01 100.0% 98.1%
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.67 52.0 4.09e-01 88.0% 75.2%
3712073 101.1.2.122 ↗ alpha arrays › HTH › HTH › winged helix domain › CSN8_PSD8_EIF3K 0.63 41.0 4.13e-01 80.0% 66.0%
3976327 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.59 41.0 4.34e-01 78.0% 82.2%
3483854 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 38.0 3.94e-01 78.0% 71.1%
4643287 4012.1.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.57 40.0 2.93e-01 100.0% 25.3%
3956578 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.57 48.0 3.49e-01 100.0% 74.2%
3223367 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 47.0 4.38e-01 100.0% 92.3%
3960156 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.65e-01 98.0% 95.8%
4986404 4008.1.1.0 ↗ 0.55 39.0 3.98e-01 92.0% 80.0%
3621302 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.54 46.0 3.23e-01 100.0% 75.9%
3320938 4020.1.1.1 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.54 46.0 3.25e-01 100.0% 78.8%
2722401 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.53 40.0 2.92e-01 86.0% 70.0%
3485233 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.53 39.0 2.64e-01 92.0% 50.4%
4600774 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 44.0 4.33e-01 100.0% 98.2%
3936791 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 42.0 3.60e-01 100.0% 54.1%
5057952 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.52 34.0 3.19e-01 100.0% 52.3%
3475306 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 38.0 3.20e-01 92.0% 71.8%
4967657 375.1.1.325 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › OapC 0.50 34.0 3.50e-01 100.0% 77.8%