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OP323074.1__UXD81416.1__D4044_049__00049

Bact-Vir

OP323074.1__UXD81416.1__D4044_049__00049

Identity

Accession:
OP323074 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-40
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.81 64.0 6.10e-01 100.0% 73.9%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.78 56.0 3.64e-01 100.0% 17.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 52.0 4.41e-01 87.2% 43.8%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.76 54.0 3.59e-01 100.0% 19.1%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.74 50.0 3.43e-01 84.6% 20.3%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.72 53.0 4.38e-01 82.1% 84.5%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.71 50.0 3.83e-01 82.1% 30.6%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 57.0 4.73e-01 100.0% 54.1%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 52.0 3.62e-01 100.0% 25.8%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 47.0 4.13e-01 94.9% 46.0%
5ff5A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 50.0 3.06e-01 82.1% 33.6%
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 47.0 3.64e-01 84.6% 31.6%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.65 46.0 3.32e-01 82.1% 24.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.65 52.0 5.04e-01 100.0% 85.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.22e-01 100.0% 52.3%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 40.0 3.61e-01 76.9% 42.1%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 49.0 4.57e-01 100.0% 88.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.37e-01 100.0% 64.4%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 45.0 4.41e-01 84.6% 77.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.10e-01 100.0% 62.3%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 3.49e-01 100.0% 69.3%
1qe0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 50.0 3.86e-01 100.0% 87.9%
1wq8A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.59 44.0 3.29e-01 82.1% 51.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 42.0 4.15e-01 100.0% 71.7%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 44.0 2.64e-01 84.6% 22.0%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.49e-01 100.0% 68.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 3.78e-01 100.0% 47.9%
1o4yA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 47.0 2.92e-01 100.0% 71.9%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.58 49.0 3.48e-01 100.0% 75.8%
2xotA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 3.86e-01 100.0% 74.4%
5t89X04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 46.0 3.70e-01 100.0% 93.5%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.15e-01 100.0% 66.1%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 3.72e-01 100.0% 55.0%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 44.0 4.01e-01 100.0% 63.0%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.21e-01 100.0% 31.0%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.55 39.0 2.31e-01 76.9% 26.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 3.90e-01 100.0% 65.1%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 3.39e-01 100.0% 36.1%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.91e-01 100.0% 35.6%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 39.0 2.89e-01 84.6% 64.5%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.25e-01 92.3% 70.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 43.0 3.58e-01 100.0% 57.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.53 41.0 3.83e-01 100.0% 76.8%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.53 38.0 2.82e-01 84.6% 32.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 3.50e-01 100.0% 68.1%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 3.98e-01 100.0% 83.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.69e-01 100.0% 59.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.32e-01 100.0% 63.6%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.06e-01 100.0% 87.4%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.50 35.0 2.38e-01 82.1% 18.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946886 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.91 70.0 6.39e-01 97.4% 64.0%
5024226 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.87 67.0 6.42e-01 100.0% 73.3%
None 0.82 64.0 3.75e-01 100.0% 11.1%
3258369 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 59.0 6.01e-01 100.0% 89.5%
5030309 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 57.0 5.91e-01 100.0% 97.1%
5046714 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.74 60.0 6.01e-01 100.0% 95.0%
4981763 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 58.0 5.77e-01 100.0% 87.5%
3204334 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.73 64.0 5.88e-01 100.0% 78.0%
4928567 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.72 62.0 3.62e-01 100.0% 14.7%
5044393 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 58.0 5.14e-01 100.0% 61.7%
5024903 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 61.0 5.71e-01 100.0% 78.0%
4938178 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 60.0 6.01e-01 100.0% 100.0%
5038934 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.71 61.0 5.39e-01 100.0% 69.0%
4963113 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 60.0 5.59e-01 100.0% 86.0%
3445009 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.70 61.0 3.94e-01 100.0% 22.3%
3804890 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.70 61.0 5.34e-01 100.0% 67.8%
3309343 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.70 61.0 5.49e-01 100.0% 72.7%
3495913 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 60.0 5.27e-01 100.0% 66.7%
3199611 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.70 60.0 5.17e-01 100.0% 62.5%
4013714 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 59.0 5.61e-01 100.0% 83.3%
4998373 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 58.0 5.45e-01 100.0% 84.0%
5048721 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.68 58.0 4.96e-01 100.0% 61.5%
4044015 3364.1.1.2 few secondary structure elements › Epidermal patterning factor-like protein 9 › Epidermal patterning factor-like protein 9 › Epidermal patterning factor-like protein 9 › EPF 0.68 55.0 5.25e-01 97.4% 85.7%
4943539 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 56.0 5.55e-01 100.0% 95.3%
3948622 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 57.0 5.48e-01 100.0% 88.9%
4028184 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.67 56.0 4.75e-01 100.0% 61.4%
4680459 375.1.1.67 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N 0.67 56.0 5.40e-01 100.0% 88.9%
3704822 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 56.0 3.72e-01 100.0% 24.5%
4664970 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 55.0 5.32e-01 100.0% 88.9%
3781427 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.66 55.0 3.95e-01 100.0% 37.6%
3255317 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 56.0 5.43e-01 100.0% 95.6%
3378383 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 55.0 5.37e-01 100.0% 97.8%
3378386 219.1.1.111 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.66 55.0 3.28e-01 100.0% 14.4%
3355681 4.26.1.7 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Mut7-C 0.65 55.0 4.76e-01 100.0% 81.5%
3816604 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.65 54.0 4.65e-01 97.4% 60.0%
4269256 4.1.1.245 beta barrels › SH3 › SH3 › SH3 › SspH 0.65 44.0 3.98e-01 100.0% 46.7%
3586614 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.65 44.0 4.18e-01 82.1% 58.0%
4882787 375.1.1.67 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N 0.64 52.0 5.06e-01 100.0% 85.1%
3510751 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.64 45.0 4.58e-01 84.6% 85.7%
4218691 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 44.0 3.52e-01 82.1% 34.4%
3908665 4.1.1.227 beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B 0.62 51.0 3.99e-01 100.0% 52.6%
4049414 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.61 53.0 3.98e-01 100.0% 84.2%
3232565 389.1.1.49 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_Teneurin 0.59 42.0 3.98e-01 100.0% 62.0%
3770545 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 43.0 3.05e-01 100.0% 22.7%
3604673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.72e-01 100.0% 66.3%
3598137 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.59 45.0 3.62e-01 89.7% 51.8%
3408588 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.59 47.0 4.06e-01 97.4% 90.0%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.59 47.0 3.96e-01 100.0% 50.7%
3930705 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.59 49.0 3.74e-01 100.0% 40.0%
4472981 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 49.0 3.68e-01 100.0% 80.8%
3677829 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 48.0 3.56e-01 100.0% 38.2%
3914462 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 42.0 3.47e-01 100.0% 40.0%
5058926 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.56 46.0 3.82e-01 100.0% 56.0%
3894798 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.55 45.0 4.37e-01 100.0% 86.7%
3903212 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.54 42.0 3.85e-01 100.0% 63.3%
3582834 4.1.1.319 beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.54 43.0 3.42e-01 100.0% 47.4%
3787905 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 40.0 3.55e-01 100.0% 71.4%
3191269 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 39.0 3.53e-01 100.0% 71.4%
3720772 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 38.0 3.45e-01 100.0% 71.4%