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OP328421.1__UXQ87736.1__X__00019

Bact-Vir

OP328421.1__UXQ87736.1__X__00019

Identity

Accession:
OP328421 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_phiSa2wa-st1420

TaxID: 2983321

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 151-204
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.75 51.0 3.83e-01 70.4% 53.8%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 50.0 4.28e-01 88.9% 99.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.65 50.0 4.39e-01 90.7% 100.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.20e-01 92.6% 66.1%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 44.0 2.74e-01 75.9% 18.6%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 37.0 3.43e-01 77.8% 44.4%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.62 47.0 4.69e-01 90.7% 78.9%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.59 47.0 3.91e-01 92.6% 97.2%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 51.0 3.99e-01 100.0% 55.4%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 48.0 4.41e-01 94.4% 100.0%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 45.0 4.22e-01 88.9% 98.6%
1owqA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 43.0 4.12e-01 87.0% 100.0%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 39.0 4.12e-01 92.6% 84.8%
3facA00 2.170.150.70 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › 0.57 46.0 3.78e-01 94.4% 78.9%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 42.0 4.16e-01 85.2% 100.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.03e-01 94.4% 74.6%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 45.0 2.81e-01 90.7% 81.2%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 47.0 3.85e-01 100.0% 69.7%
4wh5A00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.56 43.0 3.22e-01 90.7% 64.6%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 33.0 3.41e-01 74.1% 62.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 47.0 3.47e-01 96.3% 88.2%
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.88e-01 96.3% 99.4%
3sqiA02 1.10.443.20 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Centromere DNA-binding protein complex CBF3 subunit, domain 2 0.54 44.0 2.91e-01 100.0% 78.1%
1w9pA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 40.0 3.96e-01 88.9% 98.4%
4dwsA01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 38.0 3.08e-01 79.6% 72.4%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 3.42e-01 74.1% 60.3%
2eyzA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.15e-01 88.9% 42.9%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 48.0 3.41e-01 100.0% 68.8%
5mqrA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 42.0 2.58e-01 92.6% 78.4%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.20e-01 94.4% 53.0%
1r9cA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 37.0 3.01e-01 81.5% 88.0%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.72e-01 94.4% 75.9%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 37.0 3.38e-01 79.6% 69.3%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 3.70e-01 94.4% 77.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4986806 375.1.4.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 0.80 56.0 6.29e-01 81.5% 100.0%
3982469 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.78 50.0 5.66e-01 87.0% 87.5%
3985807 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.77 51.0 5.53e-01 87.0% 82.2%
3603358 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 43.0 4.21e-01 72.2% 51.7%
4963768 375.1.1.354 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28086 0.75 44.0 5.17e-01 81.5% 91.4%
3986256 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 51.0 4.97e-01 92.6% 65.0%
3976145 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 51.0 5.50e-01 87.0% 91.1%
3943642 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.70 50.0 5.40e-01 87.0% 91.1%
5083382 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.70 41.0 4.02e-01 70.4% 53.3%
3979360 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.70 47.0 4.88e-01 90.7% 76.0%
4964214 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.66 41.0 4.13e-01 87.0% 60.0%
4995839 7601.1.1.1 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N 0.66 52.0 3.42e-01 87.0% 56.2%
4022266 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.66 48.0 3.31e-01 79.6% 31.1%
5035450 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 51.0 4.33e-01 94.4% 50.5%
3228049 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 36.0 4.25e-01 70.4% 82.9%
3584345 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.64 55.0 4.12e-01 98.1% 39.3%
3663538 1129.1.1.1 ↗ a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.62 43.0 3.64e-01 92.6% 43.3%
4960549 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.42e-01 92.6% 80.0%
2426538 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.60 51.0 4.02e-01 100.0% 43.8%
2455590 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.60 50.0 3.83e-01 100.0% 62.3%
3205497 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 42.0 3.41e-01 72.2% 39.0%
3709555 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 41.0 4.10e-01 87.0% 70.9%
4950506 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.31e-01 75.9% 35.2%
3219936 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.59 49.0 3.08e-01 100.0% 17.0%
4956733 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.59 40.0 3.72e-01 81.5% 54.3%
3722095 223.1.1.21 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.58 45.0 2.79e-01 90.7% 14.3%
3921576 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 51.0 3.78e-01 100.0% 62.9%
3784839 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 49.0 4.12e-01 100.0% 72.0%
4013690 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.58 49.0 4.91e-01 94.4% 92.7%
5026482 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.58 49.0 3.00e-01 100.0% 16.4%
4883688 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.58 45.0 4.15e-01 90.7% 100.0%
4933213 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.58 39.0 3.64e-01 88.9% 54.3%
3189994 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.58 39.0 3.40e-01 92.6% 43.3%
3835432 1129.1.1.1 ↗ a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 0.58 45.0 3.25e-01 96.3% 29.9%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 39.0 3.68e-01 81.5% 55.7%
6500 284.2.1.1 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › Glyco_hydro_18 0.57 44.0 4.11e-01 90.7% 100.0%
3963560 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.57 46.0 4.50e-01 94.4% 83.3%
3505640 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 38.0 3.70e-01 90.7% 61.7%
4985312 2.1.1.70 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.56 38.0 3.04e-01 75.9% 30.8%
4459345 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.55 46.0 2.81e-01 100.0% 18.5%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.55 37.0 3.69e-01 90.7% 67.3%
4109302 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.55 37.0 3.04e-01 70.4% 77.1%
3204805 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.55 45.0 3.90e-01 96.3% 100.0%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 40.0 3.93e-01 94.4% 71.7%
4226159 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.54 40.0 3.69e-01 83.3% 100.0%
4888050 3398.1.1.1 ↗ a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › TMEM173 0.54 43.0 3.37e-01 90.7% 42.1%
3168104 5.1.5.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.53 42.0 2.45e-01 100.0% 98.7%
3263489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.74e-01 92.6% 69.2%
3587556 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 41.0 3.91e-01 92.6% 84.3%
None — 0.52 43.0 2.64e-01 96.3% 53.5%
D2 medium residues 132-150_216-275_599-650
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 34.0 5.32e-01 79.4% 89.7%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 35.0 5.42e-01 78.6% 96.4%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 37.0 5.13e-01 80.9% 85.1%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 37.0 4.56e-01 80.2% 66.7%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 36.0 4.72e-01 80.2% 73.7%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 36.0 4.83e-01 80.2% 77.8%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 36.0 4.59e-01 79.4% 70.0%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 36.0 4.90e-01 81.7% 82.9%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 36.0 4.99e-01 80.9% 90.5%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 35.0 4.16e-01 80.9% 75.3%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 34.0 4.06e-01 81.7% 75.6%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 34.0 4.09e-01 80.9% 77.3%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 32.0 3.82e-01 80.2% 72.7%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 38.0 4.29e-01 71.8% 80.0%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 30.0 3.59e-01 77.1% 70.9%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 31.0 3.49e-01 85.5% 70.2%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 31.0 3.53e-01 84.0% 76.5%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 36.0 3.10e-01 70.2% 75.7%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 40.0 4.13e-01 84.7% 85.7%
2nsfA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 40.0 3.77e-01 84.0% 81.1%
3l39A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 36.0 3.17e-01 72.5% 93.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4492035 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.88 38.0 5.29e-01 79.4% 80.0%
4131887 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 37.0 4.84e-01 79.4% 70.9%
4606780 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.85 37.0 5.48e-01 79.4% 91.7%
3289034 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.83 37.0 5.37e-01 80.9% 90.5%
3962552 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 37.0 4.90e-01 77.9% 76.0%
3972270 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 36.0 4.98e-01 79.4% 80.0%
3966025 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 37.0 4.92e-01 80.9% 77.0%
3945377 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 38.0 5.37e-01 78.6% 90.8%
3283074 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 35.0 4.38e-01 79.4% 64.7%
4071326 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.81 38.0 4.79e-01 80.9% 73.8%
142817 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 37.0 5.02e-01 80.9% 81.9%
3942695 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 38.0 5.32e-01 79.4% 92.3%
3279743 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.80 38.0 5.19e-01 80.2% 87.1%
5041148 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 32.0 4.26e-01 73.3% 71.4%
4395758 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.76 35.0 4.45e-01 80.2% 71.2%
3971154 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 38.0 5.08e-01 85.5% 100.0%
5013051 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 45.0 4.58e-01 82.4% 66.9%
4978135 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 4.33e-01 70.2% 91.7%
4982076 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.63 45.0 4.46e-01 73.3% 90.7%
3372955 101.1.1.267 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.60 43.0 4.49e-01 82.4% 79.2%
4969699 101.1.6.40 ↗ alpha arrays › HTH › HTH › TrpR › DUF1670 0.60 32.0 4.10e-01 84.7% 86.3%
4188114 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.60 26.0 3.33e-01 82.4% 66.3%
3408065 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.60 37.0 4.28e-01 83.2% 85.3%
3943353 3831.1.1.0 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.59 31.0 3.72e-01 80.9% 74.4%
3964882 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.58 49.0 4.89e-01 89.3% 100.0%
3964524 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.58 49.0 4.41e-01 89.3% 100.0%
3963336 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.58 48.0 4.08e-01 89.3% 100.0%
3963536 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.57 47.0 5.01e-01 89.3% 100.0%
3964047 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.92e-01 89.3% 100.0%
3953807 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.56 43.0 3.98e-01 85.5% 63.6%
3883588 604.1.1.125 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SYNRG_C 0.51 36.0 3.23e-01 71.0% 90.6%
D3 medium residues 319-410
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vt0M02 1.10.1740.160 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.59 31.0 3.16e-01 76.1% 51.1%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 32.0 3.31e-01 76.1% 62.6%
4j7rB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 35.0 3.22e-01 85.9% 52.5%
5i47B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.51 32.0 3.61e-01 75.0% 86.6%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3478951 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 40.0 2.84e-01 78.3% 38.4%
3613090 7.1.1.18 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › DUF7761 0.51 38.0 3.50e-01 78.3% 81.7%
D4 medium residues 455-517
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 49.0 3.38e-01 81.0% 81.2%
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.63 47.0 3.09e-01 79.4% 62.0%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 46.0 3.21e-01 82.5% 86.1%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.60 45.0 4.32e-01 79.4% 87.3%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.47e-01 76.2% 70.4%
7z8iC01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.56 33.0 3.08e-01 77.8% 45.7%
2qvwB05 1.10.1740.150 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.55 35.0 3.31e-01 71.4% 52.6%
3unbF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 42.0 2.76e-01 81.0% 54.5%
1c0gA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 32.0 2.85e-01 79.4% 41.3%
5lb3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 2.99e-01 93.7% 69.7%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.52 45.0 3.29e-01 100.0% 82.0%
4nrvA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 39.0 2.98e-01 82.5% 52.4%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.30e-01 82.5% 75.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994746 708.1.2.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP 0.67 50.0 4.22e-01 79.4% 99.0%
4011747 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.56 38.0 3.41e-01 71.4% 51.6%
3712185 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.56 38.0 3.64e-01 71.4% 64.0%
5024100 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.44e-01 85.7% 47.7%
4048400 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.53 37.0 3.48e-01 76.2% 85.9%
5005164 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.50 36.0 3.14e-01 79.4% 52.8%
4013126 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.50 35.0 3.19e-01 74.6% 97.8%