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OP328422.1__UXR28985.1__X__00012

Bact-Vir

OP328422.1__UXR28985.1__X__00012

Identity

Accession:
OP328422 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_phiSa2wa-st1633

TaxID: 2983322

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-71
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 54.0 5.45e-01 100.0% 68.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.76e-01 100.0% 90.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 53.0 5.63e-01 100.0% 86.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 4.84e-01 100.0% 70.1%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.35e-01 100.0% 85.3%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 5.05e-01 100.0% 79.5%
1d0nA05 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 46.0 4.12e-01 77.6% 88.5%
1aqtA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.63 53.0 4.98e-01 100.0% 81.8%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.37e-01 100.0% 58.0%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.96e-01 100.0% 81.7%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.63 48.0 4.69e-01 86.6% 97.3%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.62 52.0 4.90e-01 100.0% 80.7%
5zwlE01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.61 52.0 4.85e-01 100.0% 80.7%
6focH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.61 51.0 4.55e-01 100.0% 69.5%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 46.0 3.34e-01 80.6% 64.7%
1d0nA02 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 43.0 3.79e-01 77.6% 81.8%
2hldH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.60 51.0 4.85e-01 100.0% 84.5%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 43.0 3.63e-01 76.1% 70.2%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 41.0 3.66e-01 74.6% 61.2%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 3.59e-01 88.1% 59.6%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.57 47.0 3.94e-01 100.0% 98.5%
4jzjC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.61e-01 88.1% 97.1%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.45e-01 97.0% 97.3%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 50.0 4.75e-01 100.0% 82.3%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 45.0 3.53e-01 91.0% 96.8%
2dm2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.81e-01 88.1% 82.7%
5o9iA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.55 46.0 3.45e-01 100.0% 36.8%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 44.0 3.60e-01 91.0% 81.0%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 44.0 3.14e-01 92.5% 80.6%
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 44.0 3.38e-01 100.0% 37.1%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 42.0 3.29e-01 100.0% 36.3%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.54 42.0 3.22e-01 100.0% 35.5%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.25e-01 73.1% 82.4%
2jtdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.60e-01 92.5% 88.5%
1d3yB02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.52 37.0 2.67e-01 76.1% 58.1%
5d1iA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 3.05e-01 74.6% 68.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.86e-01 100.0% 85.5%
4zrxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 42.0 3.67e-01 92.5% 92.4%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 3.67e-01 97.0% 89.1%
4r0mB01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.50 43.0 2.67e-01 97.0% 51.4%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 42.0 3.82e-01 95.5% 89.5%
3amlA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.35e-01 88.1% 72.2%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.82 53.0 4.81e-01 100.0% 50.0%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.76 54.0 5.91e-01 100.0% 90.9%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.76 54.0 6.04e-01 100.0% 96.2%
4999741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 52.0 4.90e-01 100.0% 61.3%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.74 52.0 5.72e-01 100.0% 90.9%
5053244 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.71 51.0 4.52e-01 77.6% 96.0%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.70 48.0 4.81e-01 100.0% 70.0%
4214438 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 50.0 5.13e-01 100.0% 78.5%
3307438 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.68 49.0 3.99e-01 76.1% 76.0%
2643930 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.68 51.0 4.44e-01 79.1% 93.0%
5072973 224.1.1.0 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.68 49.0 4.28e-01 77.6% 87.6%
4997310 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.68 49.0 4.43e-01 77.6% 98.9%
5013634 221.1.4.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like 0.66 46.0 4.14e-01 73.1% 90.3%
4453471 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.65 55.0 5.18e-01 100.0% 87.1%
3933780 11.1.1.854 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7583 0.65 51.0 3.50e-01 85.1% 39.6%
3926791 11.1.1.854 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7583 0.65 52.0 4.51e-01 86.6% 76.0%
3256005 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 4.57e-01 94.0% 88.7%
4219566 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.64 55.0 5.17e-01 100.0% 84.7%
4202375 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.64 54.0 5.13e-01 100.0% 85.9%
3570981 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.63 45.0 4.00e-01 77.6% 81.9%
3773397 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.62 45.0 3.93e-01 79.1% 82.7%
3815071 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.62 46.0 2.76e-01 83.6% 42.6%
3921486 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.61 44.0 3.05e-01 79.1% 38.0%
5024337 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 48.0 4.31e-01 88.1% 92.6%
3272904 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 4.36e-01 86.6% 91.8%
4958502 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 45.0 4.55e-01 85.1% 98.5%
3787684 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 51.0 4.38e-01 100.0% 71.4%
164156 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 44.0 3.81e-01 88.1% 82.7%
4025829 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 4.22e-01 100.0% 92.7%
3622389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 37.0 3.78e-01 97.0% 70.8%
3706998 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.05e-01 100.0% 83.3%
4984220 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.55 44.0 3.45e-01 100.0% 39.4%
3604113 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.54 42.0 3.41e-01 100.0% 40.7%
4642797 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.54 43.0 3.32e-01 100.0% 36.5%
4993808 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.53 41.0 3.32e-01 100.0% 41.4%
5031634 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.53 43.0 3.41e-01 100.0% 40.6%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 35.0 3.40e-01 100.0% 58.7%
1413813 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 37.0 4.01e-01 77.6% 100.0%
3873143 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.52 40.0 3.53e-01 88.1% 84.5%
4993128 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.52 37.0 2.91e-01 82.1% 33.1%
None — 0.51 43.0 2.51e-01 100.0% 9.5%
4998392 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.51 43.0 3.35e-01 100.0% 52.1%
4999902 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.51 42.0 3.38e-01 100.0% 44.8%
4497776 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.50 39.0 3.78e-01 89.6% 93.8%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 36.0 3.27e-01 100.0% 54.7%